Repeat sequences for mouse: 262 31.5 2.2 0.0 MUSXRCC1G 511 602 (36747) C MMFLAM SINE (20) 94 1 23 0.0 0.0 0.0 MUSXRCC1G 1428 1450 (35899) C AT_rich Low_complexity (187) 23 1 341 8.3 0.0 0.0 MUSXRCC1G 1796 1843 (35506) + ID6 SINE 36 83 (1) * 657 2.4 0.0 0.0 MUSXRCC1G 1814 1897 (35452) + ID6 SINE 1 84 (0) 615 4.8 0.0 0.0 MUSXRCC1G 1867 1950 (35399) + ID6 SINE 1 84 (0) * 627 3.6 0.0 0.0 MUSXRCC1G 1920 2002 (35347) + ID6 SINE 1 83 (1) 355 21.6 1.4 0.0 MUSXRCC1G 1973 2046 (35303) + ID4 SINE 1 75 (4) * 225 30.9 0.0 0.0 MUSXRCC1G 2076 2143 (35206) C MMFLAM SINE (39) 75 8 474 13.7 17.9 0.0 MUSXRCC1G 2185 2279 (35070) + MMB1F SINE 32 143 (2) 1140 10.6 9.0 0.0 MUSXRCC1G 3030 3217 (34132) + MMB2 SINE 1 205 (4) 228 27.7 1.8 7.1 MUSXRCC1G 3661 3772 (33577) + MMFLAM SINE 2 107 (7) 464 23.6 0.0 1.9 MUSXRCC1G 3966 4071 (33278) C MMB1F SINE (40) 105 2 293 26.1 0.0 11.5 MUSXRCC1G 4097 4253 (33096) C ORR1A-internal LTR/MaLR (1073) 716 578 * 801 6.5 1.9 0.0 MUSXRCC1G 4153 4259 (33090) C MMB1 SINE (37) 109 1 347 17.7 0.0 7.6 MUSXRCC1G 4267 4345 (33004) C MMFLAM SINE (1) 113 41 414 6.9 0.0 1.7 MUSXRCC1G 4786 4843 (32506) C (TGG)n Simple_repeat (79) 59 3 203 25.5 0.0 3.9 MUSXRCC1G 5498 5548 (31801) + (CATA)n Simple_repeat 3 51 (85) 670 14.4 4.8 1.6 MUSXRCC1G 5560 5684 (31665) C MMB1F SINE (9) 136 8 198 0.0 0.0 0.0 MUSXRCC1G 5714 5735 (31614) C POLY_A Low_complexity (118) 22 1 197 0.0 0.0 6.1 MUSXRCC1G 5736 5768 (31581) C MMB1F SINE (0) 145 115 1061 5.8 0.7 0.0 MUSXRCC1G 5781 5917 (31432) + MMB1 SINE 9 146 (0) 270 11.4 2.3 0.0 MUSXRCC1G 6096 6139 (31210) + MMB2 SINE 3 47 (162) 209 4.0 0.0 0.0 MUSXRCC1G 6244 6268 (31081) + (CA)n Simple_repeat 1 25 (115) 349 24.8 0.0 8.1 MUSXRCC1G 6499 6647 (30702) C (GGA)n Simple_repeat (0) 138 2 * 425 30.6 0.7 4.2 MUSXRCC1G 6540 6683 (30666) C (GA)n Simple_repeat (0) 140 2 * 441 27.1 0.7 5.0 MUSXRCC1G 6571 6710 (30639) C (GGGA)n Simple_repeat (1) 135 2 * 664 20.9 2.2 0.0 MUSXRCC1G 6628 6761 (30588) C (GGA)n Simple_repeat (1) 137 1 228 25.8 0.0 4.5 MUSXRCC1G 6777 6842 (30507) C MMFLAM SINE (2) 112 50 1312 9.9 1.0 1.5 MUSXRCC1G 7005 7205 (30144) + MMB2 SINE 2 201 (8) 385 16.0 0.0 11.7 MUSXRCC1G 7519 7612 (29737) C MMB2 SINE (83) 126 44 277 19.4 4.5 3.0 MUSXRCC1G 9543 9609 (27740) C (CAGA)n Simple_repeat (68) 68 1 357 4.7 0.0 0.0 MUSXRCC1G 10437 10479 (26870) C (CA)n Simple_repeat (97) 43 1 180 22.6 3.8 1.9 MUSXRCC1G 10869 10921 (26428) + MIR SINE/MIR 82 135 (127) 267 27.4 6.9 2.0 MUSXRCC1G 11029 11130 (26219) + MMFLAM SINE 8 114 (0) 215 26.8 0.0 4.9 MUSXRCC1G 11161 11242 (26107) + ID4 SINE 2 79 (0) 764 18.2 0.0 1.4 MUSXRCC1G 11298 11440 (25909) C MMB1F SINE (2) 143 3 807 13.1 0.0 1.5 MUSXRCC1G 11689 11818 (25531) + MMB1 SINE 1 128 (18) 350 18.3 2.8 0.0 MUSXRCC1G 11869 11939 (25410) + MMB2 SINE 1 73 (136) 1372 8.9 0.5 4.2 MUSXRCC1G 12062 12275 (25074) + MMB2 SINE 1 206 (3) 334 27.5 0.9 0.0 MUSXRCC1G 12843 12951 (24398) C MIR SINE/MIR (54) 208 99 489 18.6 4.1 0.0 MUSXRCC1G 13489 13585 (23764) + MMB2 SINE 2 102 (107) 317 23.5 1.2 1.2 MUSXRCC1G 13917 13997 (23352) + ID5 SINE 1 81 (2) 644 20.7 0.7 1.5 MUSXRCC1G 14288 14422 (22927) + MMB1 SINE 4 137 (9) 466 19.1 8.7 1.7 MUSXRCC1G 14660 14774 (22575) C MMB1F SINE (7) 138 16 306 0.0 0.0 0.0 MUSXRCC1G 14807 14840 (22509) C (CA)n Simple_repeat (105) 35 2 288 18.9 7.4 5.3 MUSXRCC1G 15587 15681 (21668) C MMFLAM SINE (7) 107 11 622 15.8 7.9 10.9 MUSXRCC1G 15696 15897 (21452) C MMB2 SINE (13) 196 1 545 27.9 0.0 1.4 MUSXRCC1G 15915 16054 (21295) C MMB1 SINE (8) 138 1 441 25.3 3.6 7.2 MUSXRCC1G 16091 16256 (21093) C MMB2 SINE (49) 160 1 * 453 12.3 0.0 0.0 MUSXRCC1G 16238 16310 (21039) C ID6 SINE (10) 74 2 * 626 2.4 1.2 0.0 MUSXRCC1G 16281 16363 (20986) C ID6 SINE (0) 84 1 * 628 4.8 0.0 0.0 MUSXRCC1G 16333 16415 (20934) C ID6 SINE (0) 84 2 590 6.0 1.2 0.0 MUSXRCC1G 16386 16468 (20881) C ID6 SINE (0) 84 1 * 635 2.4 1.2 0.0 MUSXRCC1G 16438 16520 (20829) C ID6 SINE (0) 84 1 536 8.5 1.2 0.0 MUSXRCC1G 16491 16572 (20777) C ID6 SINE (0) 84 2 * 234 27.4 4.2 4.2 MUSXRCC1G 16580 16674 (20675) C MMFLAM SINE (6) 108 14 346 18.3 0.0 2.8 MUSXRCC1G 16704 16774 (20575) C MMFLAM SINE (6) 108 40 23 0.0 0.0 0.0 MUSXRCC1G 17160 17182 (20167) C AT_rich Low_complexity (187) 23 1 325 26.9 1.3 0.0 MUSXRCC1G 17665 17742 (19607) C ID2 SINE (0) 79 1 286 25.2 0.0 14.1 MUSXRCC1G 18077 18274 (19075) + ORR1A-internal LTR/MaLR 528 697 (1092) * 1083 7.5 0.0 0.7 MUSXRCC1G 18128 18274 (19075) + MMB1 SINE 1 146 (0) 26 3.1 0.0 0.0 MUSXRCC1G 18288 18319 (19030) C AT_rich Low_complexity (178) 32 1 420 22.6 4.3 0.0 MUSXRCC1G 19519 19611 (17738) + MMB2 SINE 2 98 (111) 365 18.1 0.0 0.0 MUSXRCC1G 19995 20077 (17272) C MML LINE (14) 6384 6302 1234 7.4 5.1 0.0 MUSXRCC1G 20085 20259 (17090) C MMB2 SINE (7) 202 19 234 27.9 0.8 10.7 MUSXRCC1G 20294 20415 (16934) C MMB2 SINE (64) 145 36 653 14.4 14.4 5.4 MUSXRCC1G 20821 20987 (16362) + MMB2 SINE 14 195 (14) 1045 6.3 2.8 0.0 MUSXRCC1G 21152 21293 (16056) + MMB1 SINE 1 146 (0) 380 28.9 5.9 0.0 MUSXRCC1G 21844 21978 (15371) C MMB1 SINE (0) 146 4 212 18.2 2.3 0.0 MUSXRCC1G 22129 22172 (15177) C MIR SINE/MIR (171) 91 47 274 21.9 2.1 7.3 MUSXRCC1G 23062 23157 (14192) C MMFLAM SINE (0) 114 24 261 40.5 0.0 0.0 MUSXRCC1G 23317 23395 (13954) C (CATA)n Simple_repeat (54) 82 4 295 25.6 5.8 5.8 MUSXRCC1G 23521 23657 (13692) C MMB1 SINE (0) 146 10 583 9.6 2.1 0.0 MUSXRCC1G 23847 23940 (13409) C URR1 Other (93) 158 63 243 25.9 1.7 0.0 MUSXRCC1G 24007 24064 (13285) C (CAAA)n Simple_repeat (77) 59 1 * 292 5.6 0.0 0.0 MUSXRCC1G 24030 24065 (13284) C (CAAG)n Simple_repeat (97) 39 4 371 23.3 0.0 2.2 MUSXRCC1G 24066 24155 (13194) C MMB1F SINE (2) 143 56 375 7.5 0.0 0.0 MUSXRCC1G 25405 25457 (11892) + ID6 SINE 31 83 (1) * 618 4.8 0.0 0.0 MUSXRCC1G 25428 25511 (11838) + ID6 SINE 1 84 (0) 600 3.5 0.0 1.2 MUSXRCC1G 25481 25565 (11784) + ID6 SINE 1 84 (0) * 326 22.5 5.0 1.3 MUSXRCC1G 25534 25613 (11736) + ID5 SINE 1 83 (0) * 325 5.0 0.0 0.0 MUSXRCC1G 25802 25841 (11508) + (CA)n Simple_repeat 2 41 (99) 21 3.7 0.0 0.0 MUSXRCC1G 26013 26039 (11310) C AT_rich Low_complexity (183) 27 1 337 21.5 5.1 0.0 MUSXRCC1G 26710 26788 (10561) C MMB1F SINE (51) 94 12 858 4.7 14.7 1.6 MUSXRCC1G 27197 27325 (10024) + MMB1 SINE 1 146 (0) 227 28.9 0.0 6.3 MUSXRCC1G 30414 30555 (6794) C (GGGA)n Simple_repeat (0) 136 4 459 23.7 1.0 0.0 MUSXRCC1G 31649 31745 (5604) + MMB2 SINE 5 102 (107) 22 3.6 0.0 0.0 MUSXRCC1G 31936 31963 (5386) C AT_rich Low_complexity (182) 28 1 276 23.7 6.2 2.1 MUSXRCC1G 32047 32143 (5206) C MMB2 SINE (107) 102 2 336 12.5 2.8 2.8 MUSXRCC1G 32197 32268 (5081) C ID6 SINE (10) 74 3 208 22.4 0.9 12.2 MUSXRCC1G 32295 32401 (4948) C MMFLAM SINE (15) 99 5 1105 5.6 1.4 0.0 MUSXRCC1G 32450 32592 (4757) C MMB1 SINE (1) 145 1 219 16.3 7.0 2.3 MUSXRCC1G 33429 33514 (3835) C MSR1 Satellite (5) 106 17 357 22.9 4.6 2.8 MUSXRCC1G 34321 34429 (2920) C MMFLAM SINE (3) 111 1 277 25.9 2.5 0.0 MUSXRCC1G 34489 34569 (2780) + MMB1 SINE 9 91 (55) 566 14.7 1.1 0.0 MUSXRCC1G 35387 35481 (1868) + MMB2 SINE 35 130 (79) 803 18.7 3.0 0.6 MUSXRCC1G 35535 35700 (1649) + MMB2 SINE 1 170 (39) unique seqs = 1 ---------------------------------------------------------------------------- Masked sequence and matches in compressed format