Repeat sequences for hamster: 510 16.5 2.3 8.3 HAMBMHC 448 580 (65735) C MMB2 SINE (84) 125 1 902 13.4 0.0 2.0 HAMBMHC 617 765 (65550) C MMB1 SINE (0) 146 1 834 11.5 0.0 1.5 HAMBMHC 1672 1801 (64514) C MMB1F SINE (10) 135 8 22 0.0 0.0 0.0 HAMBMHC 1935 1956 (64359) C AT_rich Low_complexity (151) 59 38 220 28.9 0.8 8.3 HAMBMHC 1990 2110 (64205) + MMFLAM SINE 1 112 (2) 25 5.4 0.0 0.0 HAMBMHC 5697 5733 (60582) C AT_rich Low_complexity (173) 37 1 445 2.0 0.0 0.0 HAMBMHC 5740 5790 (60525) C (CA)n Simple_repeat (89) 51 1 367 25.5 2.1 0.0 HAMBMHC 5857 5950 (60365) C MMB2 SINE (113) 96 1 823 7.3 2.0 6.0 HAMBMHC 5978 6127 (60188) C MMB1F SINE (0) 145 2 353 18.3 1.4 0.0 HAMBMHC 7228 7298 (59017) C MMB2 SINE (113) 96 25 683 18.5 2.2 1.5 HAMBMHC 7333 7467 (58848) C MMB1 SINE (2) 144 9 371 20.5 2.2 16.2 HAMBMHC 7477 7705 (58610) C MMB2 SINE (12) 197 1 396 20.6 4.3 0.0 HAMBMHC 7857 7948 (58367) + MTC LTR/MaLR 116 211 (210) 297 23.5 1.5 0.0 HAMBMHC 7949 8016 (58299) + MMB2 SINE 1 69 (140) 25 0.0 0.0 0.0 HAMBMHC 8122 8146 (58169) C AT_rich Low_complexity (185) 25 1 515 20.6 1.3 1.3 HAMBMHC 8184 8338 (57977) + MTD LTR/MaLR 265 419 (0) 516 15.2 1.0 2.0 HAMBMHC 8470 8568 (57747) C MMB1F SINE (16) 129 32 305 25.2 3.9 2.9 HAMBMHC 10072 10174 (56141) + MIR2 LINE/L2 43 146 (0) 278 5.7 0.0 0.0 HAMBMHC 12454 12488 (53827) C (CA)n Simple_repeat (105) 35 1 219 27.2 4.9 0.0 HAMBMHC 15113 15193 (51122) C (GA)n Simple_repeat (55) 85 1 503 16.9 0.0 0.0 HAMBMHC 17049 17125 (49190) + (CA)n Simple_repeat 1 77 (63) 796 11.8 3.1 0.0 HAMBMHC 18035 18161 (48154) C (TGAG)n Simple_repeat (4) 132 2 226 34.7 2.0 1.0 HAMBMHC 20041 20138 (46177) C (GGAA)n Simple_repeat (37) 99 1 344 18.5 13.9 0.0 HAMBMHC 22407 22557 (43758) + MMSQR2 Other 226 397 (235) 283 3.0 0.0 0.0 HAMBMHC 23505 23537 (42778) C (CA)n Simple_repeat (107) 33 1 189 27.9 6.3 2.5 HAMBMHC 23925 24003 (42312) + MIR2 LINE/L2 63 144 (2) 176 10.3 0.0 0.0 HAMBMHC 24030 24058 (42257) C MIR2 LINE/L2 (1) 145 117 22 5.9 0.0 0.0 HAMBMHC 24976 25009 (41306) C AT_rich Low_complexity (176) 34 1 453 1.8 1.8 0.0 HAMBMHC 25430 25485 (40830) + (CA)n Simple_repeat 1 57 (83) 244 35.1 0.9 0.9 HAMBMHC 26899 27009 (39306) C (GGAA)n Simple_repeat (23) 113 3 1020 13.0 10.9 0.0 HAMBMHC 27688 27879 (38436) C URR1 Other (11) 240 28 230 30.8 8.5 0.8 HAMBMHC 28138 28267 (38048) + MMB1 SINE 1 140 (6) 207 27.3 0.0 3.9 HAMBMHC 30165 30241 (36074) + MIR2 LINE/L2 57 130 (16) 397 20.2 0.0 3.6 HAMBMHC 32632 32715 (33600) + MMFLAM SINE 29 109 (5) 387 7.8 0.0 0.0 HAMBMHC 37036 37086 (29229) C (CA)n Simple_repeat (88) 52 2 255 30.4 1.3 0.0 HAMBMHC 38301 38379 (27936) C RATID SINE (2) 92 13 * 302 22.2 1.4 1.4 HAMBMHC 38320 38391 (27924) C ID4 SINE (4) 75 4 195 38.1 0.0 1.5 HAMBMHC 38844 38977 (27338) + (GGGA)n Simple_repeat 3 134 (2) 303 22.8 0.0 0.0 HAMBMHC 41880 41936 (24379) + (CA)n Simple_repeat 1 57 (83) 211 41.5 0.0 0.0 HAMBMHC 43089 43211 (23104) C POLY_G Low_complexity (17) 123 1 1005 8.1 0.0 0.0 HAMBMHC 44468 44603 (21712) C (TGAG)n Simple_repeat (0) 136 1 746 15.0 2.0 2.7 HAMBMHC 45334 45480 (20835) C MMB1 SINE (0) 146 1 820 12.9 0.0 2.2 HAMBMHC 46132 46270 (20045) + MMB1F SINE 8 143 (2) 862 13.2 0.0 4.0 HAMBMHC 47499 47649 (18666) + MMB1 SINE 1 145 (1) 279 0.0 0.0 0.0 HAMBMHC 47651 47681 (18634) + (GA)n Simple_repeat 2 32 (108) 217 20.6 8.8 0.0 HAMBMHC 48872 48939 (17376) C (CAAAA)n Simple_repeat (63) 75 2 * 273 16.3 0.0 0.0 HAMBMHC 48894 48942 (17373) C (CAAA)n Simple_repeat (84) 52 4 907 7.2 1.3 5.3 HAMBMHC 48943 49094 (17221) C MMB1 SINE (0) 146 1 242 9.4 0.0 0.0 HAMBMHC 49554 49585 (16730) + (CA)n Simple_repeat 2 33 (107) 196 33.5 5.1 3.8 HAMBMHC 49717 50032 (16283) + L1ME3 LINE/L1 376 695 (216) 676 17.0 0.0 4.1 HAMBMHC 50068 50214 (16101) C MMB1 SINE (1) 145 5 208 23.4 2.1 0.0 HAMBMHC 50546 50592 (15723) + (CA)n Simple_repeat 1 48 (92) 486 22.0 5.3 3.0 HAMBMHC 50603 50734 (15581) C MMB1 SINE (10) 136 2 28 2.9 0.0 0.0 HAMBMHC 52111 52144 (14171) C AT_rich Low_complexity (176) 34 1 240 8.1 2.7 0.0 HAMBMHC 54524 54560 (11755) C (CAA)n Simple_repeat (99) 39 2 738 7.9 0.0 18.6 HAMBMHC 54561 54737 (11578) C MMB1F SINE (0) 145 2 289 23.8 9.5 0.0 HAMBMHC 54787 54891 (11424) C MER20 DNA/MER1_type (68) 150 36 306 28.3 5.8 7.3 HAMBMHC 59790 59994 (6321) + MMB2 SINE 1 202 (7) 790 11.3 1.4 4.2 HAMBMHC 60026 60167 (6148) + MMB1 SINE 9 146 (0) 999 15.0 7.3 0.0 HAMBMHC 60172 60364 (5951) + MMB2 SINE 1 207 (2) 748 11.7 0.0 0.0 HAMBMHC 61104 61206 (5109) C (GAA)n Simple_repeat (35) 103 1 914 9.7 0.7 2.8 HAMBMHC 61250 61393 (4922) + MMB1 SINE 1 141 (5) 478 25.4 0.0 1.8 HAMBMHC 61395 61504 (4811) C (TA)n Simple_repeat (31) 109 2 396 0.0 0.0 0.0 HAMBMHC 62740 62783 (3532) C (CA)n Simple_repeat (96) 44 1 819 9.1 1.4 4.9 HAMBMHC 62785 62927 (3388) C MMB1F SINE (6) 139 2 366 23.5 6.5 5.2 HAMBMHC 62818 62970 (3345) C ORR1B-INT LTR/MaLR (722) 757 603 * unique seqs = 1 ---------------------------------------------------------------------------- Masked sequence and matches in compressed format