RepeatMasker summary: ================================================== file name: /repeatmasker/tmp/RMemai sequences: 1 total length: 224093 bp GC level: 38.67 % bases masked 79531 bp ( 35.49 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 38 5561 bp 2.48 % B1s 15 1891 bp 0.84 % B2-B4 19 3170 bp 1.41 % IDs 0 0 bp 0.00 % MIRs 4 500 bp 0.22 % LINEs: 87 53227 bp 23.75 % LINE1 85 52978 bp 23.64 % LINE2 2 249 bp 0.11 % LTR elements: 23 13152 bp 5.87 % MaLRs 8 1484 bp 0.66 % Retroviral 10 9645 bp 4.30 % MER4_group 0 0 bp 0.00 % DNA elements: 1 227 bp 0.10 % MER1_type 1 227 bp 0.10 % MER2_type 0 0 bp 0.00 % Mariners 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 72167 bp 32.20 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 82 5479 bp 2.44 % Low complexity: 36 1881 bp 0.84 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The sequence(s) were assumed to be of rodent origin. RepeatMasker version 05/05/99 default ProcessRepeats version 05/05/99 Repbase version 3.04 Repeats: SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) 946 12.1 0.7 0.0 MusHbb_domain.seq 15 255 (223838) C Lx2B LINE/L1 (457) 6530 5589 2718 11.5 2.9 0.9 MusHbb_domain.seq 258 701 (223392) + Lx2B LINE/L1 5737 6189 (10) 459 0.0 0.0 0.0 MusHbb_domain.seq 846 896 (223197) + (TA)n Simple_repeat 1 51 (0) 2516 18.9 5.7 1.5 MusHbb_domain.seq 1313 1861 (222232) C Lx4 LINE/L1 (4) 7050 6479 26 5.0 0.0 0.0 MusHbb_domain.seq 2237 2276 (221817) + AT_rich Low_complexity 1 40 (0) 496 27.6 6.5 0.4 MusHbb_domain.seq 2389 2634 (221459) C Lx9 LINE/L1 (161) 7512 7252 601 29.3 2.3 2.8 MusHbb_domain.seq 3264 3478 (220615) + B3 SINE/B2 1 214 (11) 412 24.9 6.1 6.1 MusHbb_domain.seq 3916 4160 (219933) C Lx8 LINE/L1 (419) 7075 6831 369 0.0 0.0 0.0 MusHbb_domain.seq 5699 5739 (218354) + (TG)n Simple_repeat 2 42 (0) 27 0.0 0.0 0.0 MusHbb_domain.seq 6400 6426 (217667) + AT_rich Low_complexity 1 27 (0) 288 37.4 9.2 0.0 MusHbb_domain.seq 7715 7845 (216248) + MIR SINE/MIR 4 146 (116) 2210 10.9 0.6 1.1 MusHbb_domain.seq 8803 9161 (214932) C L1_MM LINE/L1 (21) 6577 6221 1758 8.2 0.0 0.0 MusHbb_domain.seq 9159 9401 (214692) + L1_MM LINE/L1 5950 6192 (406) * 182 30.1 5.2 5.2 MusHbb_domain.seq 9916 10068 (214025) + MIR SINE/MIR 92 244 (18) 419 27.0 6.6 3.1 MusHbb_domain.seq 10286 10481 (213612) C B3A SINE/B2 (0) 210 8 751 17.5 9.0 0.5 MusHbb_domain.seq 10514 10713 (213380) + MTC LTR/MaLR 13 229 (192) 287 30.6 0.0 4.1 MusHbb_domain.seq 11011 11108 (212985) + PB1D10 SINE/Alu 1 94 (24) 315 26.0 3.0 0.0 MusHbb_domain.seq 11934 12033 (212060) + (CATATA)n Simple_repeat 2 104 (0) 276 5.3 0.0 0.0 MusHbb_domain.seq 12125 12162 (211931) + (TG)n Simple_repeat 1 38 (0) 513 0.0 0.0 0.0 MusHbb_domain.seq 14326 14382 (209711) + (GA)n Simple_repeat 2 58 (0) 646 17.2 0.9 0.0 MusHbb_domain.seq 14383 14498 (209595) C B1_MM SINE/Alu (23) 124 8 1176 5.4 0.0 0.7 MusHbb_domain.seq 14769 14915 (209178) C B1_MM SINE/Alu (1) 146 1 198 0.0 0.0 0.0 MusHbb_domain.seq 15037 15058 (209035) + (TTA)n Simple_repeat 3 24 (0) 392 26.3 12.3 7.3 MusHbb_domain.seq 15117 15236 (208857) C Lx7 LINE/L1 (29) 7744 7631 405 0.0 0.0 0.0 MusHbb_domain.seq 15237 15281 (208812) + (TAA)n Simple_repeat 3 47 (0) 392 26.3 12.3 7.3 MusHbb_domain.seq 15282 15460 (208633) C Lx7 LINE/L1 (142) 7631 7430 299 12.7 1.6 0.0 MusHbb_domain.seq 15461 15523 (208570) + GA-rich Low_complexity 3 66 (0) 279 13.0 0.0 0.0 MusHbb_domain.seq 15840 15893 (208200) + (CAA)n Simple_repeat 1 54 (0) 339 26.2 6.6 3.3 MusHbb_domain.seq 15957 16139 (207954) C L2 LINE/L2 (1324) 1989 1801 432 24.5 4.1 0.0 MusHbb_domain.seq 16733 16830 (207263) + B1_MM SINE/Alu 40 141 (6) 249 8.3 0.0 0.0 MusHbb_domain.seq 17146 17181 (206912) + (TCC)n Simple_repeat 3 38 (0) 4021 4.5 0.0 0.0 MusHbb_domain.seq 21124 21635 (202458) C L1_MM LINE/L1 (12) 6586 6075 257 13.3 0.0 5.3 MusHbb_domain.seq 22769 22843 (201250) + (GGGGA)n Simple_repeat 3 73 (0) 479 25.2 0.0 1.7 MusHbb_domain.seq 23691 23809 (200284) + MTA LTR/MaLR 5 121 (276) 292 24.2 7.5 0.0 MusHbb_domain.seq 24191 24351 (199742) + (CTGTG)n Simple_repeat 4 176 (0) 32 0.0 0.0 0.0 MusHbb_domain.seq 26313 26344 (197749) + AT_rich Low_complexity 1 32 (0) 328 27.8 6.8 0.6 MusHbb_domain.seq 30222 30383 (193710) C L1MA9 LINE/L1 (24) 6284 6113 7298 24.4 3.9 4.2 MusHbb_domain.seq 32922 34941 (189152) + MERVL LTR/Retroviral 2835 4941 (823) 2633 11.5 2.0 0.5 MusHbb_domain.seq 34942 35332 (188761) + MTA LTR/MaLR 1 397 (0) 7298 24.4 3.9 4.2 MusHbb_domain.seq 35333 36150 (187943) + MERVL LTR/Retroviral 4941 5760 (4) 459 21.6 0.0 5.6 MusHbb_domain.seq 36152 36276 (187817) + MT2A LTR/MaLR 4 121 (327) 2835 16.4 3.0 0.4 MusHbb_domain.seq 36281 36811 (187282) C Lx4 LINE/L1 (3) 7051 6507 629 18.1 0.8 0.0 MusHbb_domain.seq 36825 36957 (187136) C Lx3 LINE/L1 (1179) 5864 5731 2805 21.1 2.6 2.9 MusHbb_domain.seq 36983 37718 (186375) C Lx4 LINE/L1 (564) 6491 5758 677 4.5 1.1 0.0 MusHbb_domain.seq 37875 37963 (186130) + (TG)n Simple_repeat 2 91 (0) 377 26.3 13.9 0.7 MusHbb_domain.seq 37964 38115 (185978) C MT2B LTR/MaLR (60) 540 248 429 17.9 1.6 16.8 MusHbb_domain.seq 38243 38432 (185661) C Lx8 LINE/L1 (508) 6986 6826 258 15.1 3.8 0.0 MusHbb_domain.seq 38440 38492 (185601) C Lx8 LINE/L1 (615) 6879 6825 23 6.8 0.0 0.0 MusHbb_domain.seq 41526 41569 (182524) + AT_rich Low_complexity 1 44 (0) 26 6.4 0.0 0.0 MusHbb_domain.seq 42872 42918 (181175) + AT_rich Low_complexity 1 47 (0) 819 6.3 2.4 0.0 MusHbb_domain.seq 42964 43090 (181003) + (TCTA)n Simple_repeat 2 131 (0) 22 0.0 0.0 0.0 MusHbb_domain.seq 43753 43774 (180319) + AT_rich Low_complexity 1 22 (0) 353 28.0 10.8 0.5 MusHbb_domain.seq 44143 44356 (179737) C L1MA5 LINE/L1 (15) 6285 6050 413 9.1 3.0 0.0 MusHbb_domain.seq 45442 45507 (178586) + CT-rich Low_complexity 2 69 (0) 1099 8.1 0.0 1.3 MusHbb_domain.seq 45509 45657 (178436) C B1_MM SINE/Alu (0) 147 1 375 29.0 5.2 5.7 MusHbb_domain.seq 45835 46027 (178066) C Lx8 LINE/L1 (131) 7363 7172 208 13.2 7.3 1.5 MusHbb_domain.seq 46191 46258 (177835) + (CAAA)n Simple_repeat 1 72 (0) 275 32.4 3.5 0.0 MusHbb_domain.seq 46293 46437 (177656) C Lx7 LINE/L1 (401) 7372 7223 722 23.6 3.3 9.3 MusHbb_domain.seq 46617 46917 (177176) C Lx7 LINE/L1 (595) 7178 6896 668 4.5 1.1 0.0 MusHbb_domain.seq 47164 47251 (176842) + (TC)n Simple_repeat 2 90 (0) 233 24.0 17.7 3.1 MusHbb_domain.seq 47560 47655 (176438) + RSINE1 SINE/B4 12 121 (44) 445 20.6 0.0 0.0 MusHbb_domain.seq 47909 48010 (176083) C L1M4 LINE/L1 (728) 5447 5346 288 0.0 0.0 0.0 MusHbb_domain.seq 48266 48297 (175796) + (CA)n Simple_repeat 2 33 (0) 597 2.8 0.0 0.0 MusHbb_domain.seq 48300 48370 (175723) + (GA)n Simple_repeat 2 72 (0) 270 9.5 0.0 0.0 MusHbb_domain.seq 48487 48528 (175565) + (TG)n Simple_repeat 1 42 (0) * 468 0.0 0.0 0.0 MusHbb_domain.seq 48528 48579 (175514) + (GA)n Simple_repeat 1 52 (0) 429 28.4 6.0 0.0 MusHbb_domain.seq 49945 50060 (174033) C B3 SINE/B2 (101) 124 2 907 24.7 0.9 3.5 MusHbb_domain.seq 51716 51946 (172147) + B3 SINE/B2 1 225 (0) 237 14.5 0.0 4.8 MusHbb_domain.seq 53328 53389 (170704) + (TCTG)n Simple_repeat 2 60 (0) 474 6.5 0.0 0.0 MusHbb_domain.seq 53638 53699 (170394) + (TA)n Simple_repeat 2 63 (0) 245 2.9 2.9 0.0 MusHbb_domain.seq 54071 54104 (169989) + (CA)n Simple_repeat 1 35 (0) * 596 4.5 0.0 2.2 MusHbb_domain.seq 54104 54192 (169901) + (TCTA)n Simple_repeat 1 87 (0) 1135 25.4 1.0 0.0 MusHbb_domain.seq 54198 54508 (169585) C Lx9 LINE/L1 (188) 7485 7172 21 0.0 0.0 0.0 MusHbb_domain.seq 54579 54599 (169494) + AT_rich Low_complexity 1 21 (0) 1431 17.7 0.0 3.4 MusHbb_domain.seq 54636 54929 (169164) C Lx LINE/L1 (229) 6743 6460 1137 17.5 6.2 0.4 MusHbb_domain.seq 54927 55183 (168910) + Lx2 LINE/L1 6716 6987 (0) * 2950 9.5 3.5 4.5 MusHbb_domain.seq 55224 55739 (168354) + Lx LINE/L1 6462 6972 (0) 25 3.1 0.0 0.0 MusHbb_domain.seq 56092 56123 (167970) + AT_rich Low_complexity 1 32 (0) 1043 23.9 2.9 2.0 MusHbb_domain.seq 57796 58101 (165992) C Lx9 LINE/L1 (299) 7374 7066 22 5.6 0.0 0.0 MusHbb_domain.seq 60570 60605 (163488) + AT_rich Low_complexity 1 36 (0) 808 21.5 6.8 2.9 MusHbb_domain.seq 62218 62422 (161671) C B3 SINE/B2 (11) 214 2 366 19.7 0.0 0.0 MusHbb_domain.seq 62731 62862 (161231) + T-rich Low_complexity 1 132 (0) 252 0.0 0.0 0.0 MusHbb_domain.seq 63210 63237 (160856) + (TG)n Simple_repeat 2 29 (0) 267 6.9 6.9 0.0 MusHbb_domain.seq 64030 64087 (160006) + A-rich Low_complexity 2 63 (0) 290 32.3 4.2 0.0 MusHbb_domain.seq 64461 64556 (159537) + MIR SINE/MIR 161 260 (2) 27 6.2 0.0 0.0 MusHbb_domain.seq 64566 64613 (159480) + AT_rich Low_complexity 1 48 (0) 23 0.0 0.0 0.0 MusHbb_domain.seq 64658 64680 (159413) + AT_rich Low_complexity 1 23 (0) 259 29.0 4.6 4.6 MusHbb_domain.seq 65165 65295 (158798) C B4A SINE/B4 (148) 144 14 398 29.8 1.6 0.8 MusHbb_domain.seq 65375 65498 (158595) + B3A SINE/B2 5 129 (81) 12542 2.2 0.6 0.3 MusHbb_domain.seq 65837 67401 (156692) + L1_MM LINE/L1 5018 6588 (10) 390 2.4 4.9 3.7 MusHbb_domain.seq 67647 67728 (156365) + (TTTTG)n Simple_repeat 3 85 (0) 989 10.9 0.7 0.0 MusHbb_domain.seq 67730 67866 (156227) C B1_MM SINE/Alu (9) 138 1 646 17.3 0.0 1.7 MusHbb_domain.seq 68206 68384 (155709) + (CACTA)n Simple_repeat 3 178 (0) 301 21.4 0.0 3.4 MusHbb_domain.seq 68386 68474 (155619) + (CTACT)n Simple_repeat 3 88 (0) 234 0.0 0.0 0.0 MusHbb_domain.seq 68867 68892 (155201) + (CAAA)n Simple_repeat 2 27 (0) 988 9.3 1.4 0.7 MusHbb_domain.seq 69104 69242 (154851) + B1_MM SINE/Alu 1 140 (7) 2590 11.9 4.8 0.5 MusHbb_domain.seq 70390 70802 (153291) + RLTR9B LTR/Retroviral 1 431 (0) 191 29.2 13.3 2.5 MusHbb_domain.seq 70807 70926 (153167) C MIR SINE/MIR (18) 244 112 24 0.0 0.0 0.0 MusHbb_domain.seq 71737 71760 (152333) + AT_rich Low_complexity 1 24 (0) 11760 3.6 0.3 0.3 MusHbb_domain.seq 71877 73382 (150711) + Lx2 LINE/L1 5083 6587 (11) 1038 16.8 16.4 0.4 MusHbb_domain.seq 74058 74313 (149780) + Lx2 LINE/L1 6691 6987 (0) 297 20.9 0.0 0.0 MusHbb_domain.seq 74829 74895 (149198) + CT-rich Low_complexity 2 68 (0) 458 25.2 0.8 1.6 MusHbb_domain.seq 74897 75019 (149074) C B1-F SINE/Alu (9) 138 17 276 3.0 0.0 0.0 MusHbb_domain.seq 76155 76187 (147906) + (CA)n Simple_repeat 2 34 (0) 13081 6.5 0.2 0.2 MusHbb_domain.seq 76866 78638 (145455) C L1_MM LINE/L1 (10) 6588 4815 24 0.0 0.0 0.0 MusHbb_domain.seq 79567 79590 (144503) + AT_rich Low_complexity 1 24 (0) 205 22.2 1.9 1.9 MusHbb_domain.seq 79620 79673 (144420) + GA-rich Low_complexity 3 56 (0) 1670 3.5 3.5 0.0 MusHbb_domain.seq 80148 80408 (143685) + L1 LINE/L1 5087 5377 (1964) 973 11.9 1.7 0.0 MusHbb_domain.seq 80411 80586 (143507) C L1_MM LINE/L1 (28) 6570 6392 * 8575 7.8 0.6 0.2 MusHbb_domain.seq 80586 81775 (142318) + L1_MM LINE/L1 5368 6565 (33) 326 2.1 0.0 4.2 MusHbb_domain.seq 81776 81823 (142270) + (TAAA)n Simple_repeat 3 48 (0) 8575 7.8 0.6 0.2 MusHbb_domain.seq 81824 81838 (142255) + L1_MM LINE/L1 6565 6578 (20) 200 20.7 0.0 5.2 MusHbb_domain.seq 84188 84245 (139848) + A-rich Low_complexity 1 55 (0) 527 19.8 0.0 0.0 MusHbb_domain.seq 87301 87411 (136682) C Lx9 LINE/L1 (248) 7425 7315 900 19.2 8.6 0.0 MusHbb_domain.seq 87439 87636 (136457) C Lx9 LINE/L1 (470) 7203 6989 288 7.7 0.0 0.0 MusHbb_domain.seq 87640 87678 (136415) + (CA)n Simple_repeat 2 40 (0) 376 21.8 2.0 0.0 MusHbb_domain.seq 87690 87790 (136303) + Lx9 LINE/L1 7575 7677 (7) 887 18.5 7.9 4.4 MusHbb_domain.seq 89173 89399 (134694) + URR1B DNA/MER1_type 1 235 (0) 180 12.5 0.0 0.0 MusHbb_domain.seq 91169 91200 (132893) + (T)n Simple_repeat 1 32 (0) 1623 22.1 2.5 4.0 MusHbb_domain.seq 91213 91692 (132401) C Lx4 LINE/L1 (25) 7029 6557 2117 20.2 1.9 0.8 MusHbb_domain.seq 91704 92178 (131915) + Lx3 LINE/L1 6037 6516 (527) 332 27.1 8.5 4.3 MusHbb_domain.seq 92188 92375 (131718) C B3A SINE/B2 (7) 203 8 497 28.4 0.7 2.7 MusHbb_domain.seq 94023 94170 (129923) C B1-F SINE/Alu (2) 145 1 380 21.6 4.3 1.4 MusHbb_domain.seq 94726 94864 (129229) + Lx2 LINE/L1 6838 6980 (7) 2513 19.8 6.1 0.4 MusHbb_domain.seq 95245 95994 (128099) + Lx2B LINE/L1 6156 6767 (4) 656 10.6 0.0 1.0 MusHbb_domain.seq 96027 96130 (127963) + (GGA)n Simple_repeat 1 103 (0) 429 20.6 0.0 0.0 MusHbb_domain.seq 96639 96730 (127363) + (CATATA)n Simple_repeat 4 95 (0) 677 27.0 4.9 1.1 MusHbb_domain.seq 99116 99300 (124793) C B3 SINE/B2 (32) 193 2 222 25.8 1.6 0.0 MusHbb_domain.seq 100973 101034 (123059) + (TA)n Simple_repeat 1 63 (0) 3937 11.5 1.5 0.6 MusHbb_domain.seq 101518 102167 (121926) + L1_MM LINE/L1 5925 6580 (18) 279 0.0 0.0 0.0 MusHbb_domain.seq 102394 102424 (121669) + (TA)n Simple_repeat 1 31 (0) 414 0.0 0.0 0.0 MusHbb_domain.seq 103053 103098 (120995) + (CA)n Simple_repeat 2 47 (0) 4944 19.2 1.2 1.4 MusHbb_domain.seq 104054 105076 (119017) + Lx5 LINE/L1 6032 7052 (3) 664 32.7 5.9 2.0 MusHbb_domain.seq 105985 106388 (117705) C Lx8 LINE/L1 (421) 7073 6654 616 20.8 12.9 1.1 MusHbb_domain.seq 106402 106579 (117514) + Lx9 LINE/L1 7276 7474 (199) 26 0.0 0.0 0.0 MusHbb_domain.seq 107510 107535 (116558) + AT_rich Low_complexity 1 26 (0) 16730 3.1 0.0 0.0 MusHbb_domain.seq 107814 109880 (114213) + L1_MM LINE/L1 4521 6587 (11) 189 0.0 0.0 0.0 MusHbb_domain.seq 109884 109904 (114189) + (A)n Simple_repeat 1 21 (0) 222 3.7 0.0 0.0 MusHbb_domain.seq 110003 110029 (114064) + (TTTTG)n Simple_repeat 2 28 (0) 23 0.0 0.0 0.0 MusHbb_domain.seq 110435 110457 (113636) + AT_rich Low_complexity 1 23 (0) 21 0.0 0.0 0.0 MusHbb_domain.seq 110682 110702 (113391) + AT_rich Low_complexity 1 21 (0) 1013 20.6 3.4 0.0 MusHbb_domain.seq 111305 111537 (112556) C MTC LTR/MaLR (105) 316 76 1171 8.6 1.1 0.0 MusHbb_domain.seq 111538 111711 (112382) + (TTTCC)n Simple_repeat 5 180 (0) 278 14.6 1.8 0.0 MusHbb_domain.seq 112906 112977 (111116) C MTD LTR/MaLR (324) 73 5 192 16.3 0.0 0.0 MusHbb_domain.seq 113061 113103 (110990) + (TGAA)n Simple_repeat 1 43 (0) 531 18.2 1.1 2.3 MusHbb_domain.seq 113447 113622 (110471) + (CATA)n Simple_repeat 1 174 (0) 225 21.1 0.0 0.0 MusHbb_domain.seq 113630 113686 (110407) + (CA)n Simple_repeat 2 58 (0) 329 29.4 1.7 0.8 MusHbb_domain.seq 113759 113877 (110216) + B4A SINE/B4 132 251 (41) 222 17.4 2.9 4.3 MusHbb_domain.seq 115289 115357 (108736) + CT-rich Low_complexity 6 73 (0) 21 3.6 0.0 0.0 MusHbb_domain.seq 118366 118393 (105700) + AT_rich Low_complexity 1 28 (0) 1071 6.5 0.0 0.7 MusHbb_domain.seq 118625 118762 (105331) + B1_MM SINE/Alu 1 137 (10) 537 1.6 0.0 0.0 MusHbb_domain.seq 120743 120804 (103289) + (TC)n Simple_repeat 1 62 (0) 432 14.1 0.0 0.0 MusHbb_domain.seq 120808 120885 (103208) C B1_MM SINE/Alu (0) 147 70 1319 6.2 0.0 0.0 MusHbb_domain.seq 120905 121080 (103013) + L1 LINE/L1 5681 5856 (1485) 268 29.4 5.4 1.1 MusHbb_domain.seq 121275 121366 (102727) C RSINE1 SINE/B4 (26) 139 44 181 4.9 0.0 7.3 MusHbb_domain.seq 121367 121407 (102686) + (TTTTTG)n Simple_repeat 3 40 (0) 817 22.4 1.1 1.9 MusHbb_domain.seq 121423 121685 (102408) C Lx2 LINE/L1 (6) 6981 6721 * 4311 13.6 3.7 0.9 MusHbb_domain.seq 121683 122462 (101631) C Lx2 LINE/L1 (14) 6584 5783 * 7740 3.1 0.0 0.3 MusHbb_domain.seq 122457 123421 (100672) C L1_MM LINE/L1 (10) 6588 5627 * 8600 1.8 0.1 0.1 MusHbb_domain.seq 123420 124457 (99636) + L1 LINE/L1 4590 5627 (1714) 1735 8.5 2.4 0.0 MusHbb_domain.seq 124479 124724 (99369) + L1 LINE/L1 5524 5775 (1566) 294 11.5 0.0 0.0 MusHbb_domain.seq 124891 124942 (99151) + (CA)n Simple_repeat 1 52 (0) 249 26.6 6.9 1.6 MusHbb_domain.seq 124958 125214 (98879) C L1MA4 LINE/L1 (370) 5930 5645 276 24.8 6.2 3.5 MusHbb_domain.seq 125451 125563 (98530) C L1 LINE/L1 (1862) 5479 5364 5197 6.7 4.0 0.4 MusHbb_domain.seq 125718 126452 (97641) + Lx6 LINE/L1 5835 6595 (3) 30 5.9 0.0 0.0 MusHbb_domain.seq 126719 126769 (97324) + AT_rich Low_complexity 1 51 (0) 923 22.6 5.3 3.5 MusHbb_domain.seq 127741 128058 (96035) + Lx6 LINE/L1 6763 7086 (381) 501 1.7 0.0 0.0 MusHbb_domain.seq 128059 128116 (95977) + (GGGA)n Simple_repeat 1 58 (0) 1108 3.6 0.0 3.6 MusHbb_domain.seq 128117 128339 (95754) + (GA)n Simple_repeat 1 215 (0) 390 4.2 0.0 0.0 MusHbb_domain.seq 128821 128868 (95225) + (GA)n Simple_repeat 1 48 (0) 29 2.8 0.0 0.0 MusHbb_domain.seq 130660 130695 (93398) + AT_rich Low_complexity 1 36 (0) 342 0.0 0.0 0.0 MusHbb_domain.seq 131568 131605 (92488) + (TCTA)n Simple_repeat 1 38 (0) 693 11.6 11.6 0.6 MusHbb_domain.seq 131638 131801 (92292) C Lx LINE/L1 (6) 6966 6785 322 26.1 12.3 1.4 MusHbb_domain.seq 132670 133020 (91073) + L1M2 LINE/L1 5106 5403 (743) 333 0.0 0.0 0.0 MusHbb_domain.seq 133191 133227 (90866) + (TG)n Simple_repeat 1 37 (0) 261 0.0 0.0 0.0 MusHbb_domain.seq 133227 133255 (90838) + (GA)n Simple_repeat 1 29 (0) * 509 22.9 1.2 3.6 MusHbb_domain.seq 133510 133675 (90418) + Lx4 LINE/L1 6890 7051 (3) 215 23.1 0.0 0.0 MusHbb_domain.seq 134225 134263 (89830) + polypyrimidine Low_complexity 2 40 (0) 4699 13.6 3.2 0.6 MusHbb_domain.seq 135172 135989 (88104) + Lx LINE/L1 5804 6972 (0) 337 36.1 1.1 3.1 MusHbb_domain.seq 136798 136988 (87105) C L1M4 LINE/L1 (1099) 5047 4861 1653 11.5 0.0 0.0 MusHbb_domain.seq 137005 137257 (86836) C L1_MM LINE/L1 (255) 6343 6091 607 10.4 0.0 1.0 MusHbb_domain.seq 137255 137350 (86743) + L1_MM LINE/L1 6344 6438 (160) * 2433 10.2 0.5 0.0 MusHbb_domain.seq 137348 137720 (86373) C L1_MM LINE/L1 (15) 6583 6209 * 5172 7.7 0.0 0.3 MusHbb_domain.seq 137719 138434 (85659) C L1_MM LINE/L1 (510) 6088 5375 272 9.5 0.0 0.0 MusHbb_domain.seq 138428 138469 (85624) + L1 LINE/L1 5326 5367 (1974) * 785 14.8 0.0 0.0 MusHbb_domain.seq 138465 138606 (85487) + L1_MM LINE/L1 6423 6564 (34) 185 0.0 4.0 0.0 MusHbb_domain.seq 138610 138634 (85459) + (CAAA)n Simple_repeat 2 27 (0) 30 0.0 0.0 0.0 MusHbb_domain.seq 138799 138828 (85265) + AT_rich Low_complexity 1 30 (0) 3251 15.1 0.8 2.5 MusHbb_domain.seq 138829 140962 (83131) C Lx2B LINE/L1 (10) 6774 4919 1790 14.9 0.3 1.0 MusHbb_domain.seq 140963 141686 (82407) + RLTR13D LTR/Retroviral 1 791 (213) 1705 15.0 6.3 1.2 MusHbb_domain.seq 141687 142020 (82073) + IAPLTR1_MM LTR/Retroviral 1 351 (0) 16182 4.8 0.3 1.6 MusHbb_domain.seq 142074 144438 (79655) + IAP LTR/Retroviral 10 2272 (4143) 346 12.5 0.0 0.0 MusHbb_domain.seq 144438 144493 (79600) + IAP LTR/Retroviral 2646 2701 (3714) * 2850 3.6 0.3 0.0 MusHbb_domain.seq 144492 144848 (79245) + IAP LTR/Retroviral 3928 4285 (2130) * 4979 8.7 2.3 1.6 MusHbb_domain.seq 144840 145614 (78479) + IAP LTR/Retroviral 5633 6413 (2) 1708 15.2 6.0 1.2 MusHbb_domain.seq 145617 145951 (78142) + IAPLTR1_MM LTR/Retroviral 1 351 (0) 820 17.4 5.6 2.8 MusHbb_domain.seq 145952 146164 (77929) + RLTR13C LTR/Retroviral 786 1004 (0) 15939 21.2 2.2 0.6 MusHbb_domain.seq 146165 150137 (73956) C Lx2B LINE/L1 (2408) 4733 743 297 0.0 0.0 0.0 MusHbb_domain.seq 150557 150589 (73504) + (GGAA)n Simple_repeat 3 35 (0) 219 6.9 0.0 0.0 MusHbb_domain.seq 150678 150706 (73387) + (TGGGGG)n Simple_repeat 2 30 (0) 267 25.4 2.6 0.9 MusHbb_domain.seq 150844 151153 (72940) + L1MB1 LINE/L1 5347 5648 (516) 264 34.4 2.6 0.5 MusHbb_domain.seq 151173 151367 (72726) + L1MB1 LINE/L1 5714 5912 (265) 279 27.9 0.0 0.0 MusHbb_domain.seq 151604 151682 (72411) + Lx8 LINE/L1 6462 6540 (954) 228 28.0 4.3 0.0 MusHbb_domain.seq 151758 151850 (72243) C L1MA5 LINE/L1 (368) 5932 5836 841 10.1 0.0 0.0 MusHbb_domain.seq 151892 152010 (72083) + B1_MM SINE/Alu 27 145 (2) 234 0.0 0.0 0.0 MusHbb_domain.seq 152016 152041 (72052) + (TAAAAA)n Simple_repeat 2 27 (0) 411 2.1 0.0 0.0 MusHbb_domain.seq 152046 152093 (72000) + (GAAA)n Simple_repeat 2 49 (0) 218 19.2 0.0 4.1 MusHbb_domain.seq 152470 152542 (71551) + (TATAA)n Simple_repeat 5 74 (0) 462 29.7 3.1 1.0 MusHbb_domain.seq 152994 153185 (70908) + MTC LTR/MaLR 8 203 (218) 1562 14.5 0.0 1.1 MusHbb_domain.seq 153249 153530 (70563) + L1_MM LINE/L1 6309 6587 (11) 24 9.1 0.0 0.0 MusHbb_domain.seq 153630 153695 (70398) + AT_rich Low_complexity 1 66 (0) 225 25.0 0.0 0.0 MusHbb_domain.seq 156161 156220 (67873) C L1MB3 LINE/L1 (258) 5927 5868 266 24.7 7.7 2.4 MusHbb_domain.seq 156301 156521 (67572) C L1M3 LINE/L1 (745) 5401 5203 458 9.8 1.2 0.0 MusHbb_domain.seq 156646 156727 (67366) + (CA)n Simple_repeat 2 84 (0) 450 14.3 0.0 0.0 MusHbb_domain.seq 159344 159420 (64673) + (TA)n Simple_repeat 2 78 (0) 298 30.2 13.1 2.0 MusHbb_domain.seq 160418 160715 (63378) C L1 LINE/L1 (2285) 3861 3531 432 26.9 7.8 3.1 MusHbb_domain.seq 160897 161089 (63004) C L1 LINE/L1 (2646) 3500 3299 492 1.8 0.0 0.0 MusHbb_domain.seq 161187 161243 (62850) + (CTA)n Simple_repeat 3 59 (0) 576 16.7 0.7 1.4 MusHbb_domain.seq 161416 161553 (62540) + L1_MM LINE/L1 6450 6586 (12) 23 9.4 0.0 0.0 MusHbb_domain.seq 161617 161649 (62444) + AT_rich Low_complexity 1 36 (28) 415 32.7 4.5 0.6 MusHbb_domain.seq 161650 161805 (62288) C RSINE1 SINE/B4 (0) 165 4 23 9.4 0.0 0.0 MusHbb_domain.seq 161806 161835 (62258) + AT_rich Low_complexity 35 64 (0) 316 25.4 2.5 1.6 MusHbb_domain.seq 163671 163792 (60301) C L1MA8 LINE/L1 (231) 6060 5938 3245 6.4 0.0 0.0 MusHbb_domain.seq 163932 164366 (59727) + L1_MM LINE/L1 4868 5302 (2039) * 7658 3.4 0.1 0.0 MusHbb_domain.seq 164366 165320 (58773) + L1_MM LINE/L1 5625 6580 (18) * 9059 7.9 0.1 0.6 MusHbb_domain.seq 165315 166612 (57481) + L1_MM LINE/L1 5288 6579 (19) 1666 11.2 0.4 0.0 MusHbb_domain.seq 167955 168203 (55890) C Lx LINE/L1 (145) 6827 6578 21 3.6 0.0 0.0 MusHbb_domain.seq 168559 168586 (55507) + AT_rich Low_complexity 1 28 (0) 23 3.3 0.0 0.0 MusHbb_domain.seq 169861 169890 (54203) + AT_rich Low_complexity 1 30 (0) 389 20.7 2.7 1.8 MusHbb_domain.seq 169941 170051 (54042) C Lx9 LINE/L1 (1) 7672 7561 22 10.3 0.0 0.0 MusHbb_domain.seq 170989 171066 (53027) + AT_rich Low_complexity 1 78 (0) 1812 17.5 10.5 3.6 MusHbb_domain.seq 171210 171677 (52416) + RMER4 LTR 2 501 (8) 213 18.9 0.0 0.0 MusHbb_domain.seq 172847 172883 (51210) + (CA)n Simple_repeat 2 38 (0) 300 11.1 0.0 0.0 MusHbb_domain.seq 173456 173500 (50593) + (TTAA)n Simple_repeat 4 48 (0) 3262 13.5 1.1 0.2 MusHbb_domain.seq 173508 174054 (50039) C Lx2B LINE/L1 (58) 6141 5590 3705 26.2 2.6 1.1 MusHbb_domain.seq 174078 175378 (48715) C Lx2 LINE/L1 (8) 6979 5659 225 10.3 0.0 0.0 MusHbb_domain.seq 178058 178096 (45997) + Lx2 LINE/L1 6949 6987 (0) 1899 17.9 9.3 4.7 MusHbb_domain.seq 180750 181285 (42808) + RMER6A LTR 138 698 (90) 203 11.6 4.7 0.0 MusHbb_domain.seq 181549 181591 (42502) + (CAGAGA)n Simple_repeat 2 46 (0) 30 5.9 0.0 0.0 MusHbb_domain.seq 181682 181732 (42361) + AT_rich Low_complexity 1 51 (0) 1703 18.3 1.8 2.4 MusHbb_domain.seq 181733 182070 (42023) C Lx4 LINE/L1 (21) 7033 6698 416 20.8 1.0 0.0 MusHbb_domain.seq 182079 182179 (41914) + Lx9 LINE/L1 7561 7662 (22) 1147 5.4 1.4 1.4 MusHbb_domain.seq 182210 182356 (41737) + B1_MM SINE/Alu 1 147 (0) 270 0.0 0.0 0.0 MusHbb_domain.seq 183097 183126 (40967) + (T)n Simple_repeat 1 30 (0) 1194 11.5 3.3 4.9 MusHbb_domain.seq 183895 184138 (39955) C L1_MM LINE/L1 (11) 6587 6348 2572 9.1 0.0 0.3 MusHbb_domain.seq 184142 184514 (39579) + L1_MM LINE/L1 5979 6350 (248) 226 24.2 0.0 0.0 MusHbb_domain.seq 185510 185571 (38522) + L1M2 LINE/L1 2505 2566 (3959) 285 24.5 7.8 1.5 MusHbb_domain.seq 185641 185844 (38249) + L1 LINE/L1 2268 2484 (3662) 398 13.9 1.4 0.0 MusHbb_domain.seq 185849 185920 (38173) + (TA)n Simple_repeat 2 74 (0) 326 31.2 1.9 6.0 MusHbb_domain.seq 185921 186285 (37808) + L1 LINE/L1 2478 2827 (3319) 380 21.1 0.0 0.0 MusHbb_domain.seq 186353 186442 (37651) + (TA)n Simple_repeat 2 91 (0) 384 2.2 0.0 0.0 MusHbb_domain.seq 186780 186824 (37269) + (CA)n Simple_repeat 2 46 (0) 432 24.1 0.0 0.0 MusHbb_domain.seq 186825 186961 (37132) + (TA)n Simple_repeat 2 142 (0) 2356 7.1 4.8 0.3 MusHbb_domain.seq 187121 187456 (36637) C IAPLTR1_MM LTR/Retroviral (0) 351 1 330 19.6 0.0 0.0 MusHbb_domain.seq 188538 188644 (35449) + CT-rich Low_complexity 2 108 (0) 363 16.2 0.0 0.0 MusHbb_domain.seq 188750 188848 (35245) + (TCTG)n Simple_repeat 2 100 (0) 378 16.2 0.0 0.0 MusHbb_domain.seq 189126 189199 (34894) + CT-rich Low_complexity 3 76 (0) 392 5.5 1.8 0.0 MusHbb_domain.seq 189553 189607 (34486) + (TG)n Simple_repeat 2 57 (0) 23 0.0 0.0 0.0 MusHbb_domain.seq 192358 192380 (31713) + AT_rich Low_complexity 1 23 (0) 680 24.8 0.9 5.0 MusHbb_domain.seq 192646 192863 (31230) C B3 SINE/B2 (11) 214 6 800 4.7 0.0 0.9 MusHbb_domain.seq 193353 193458 (30635) + (TTTC)n Simple_repeat 4 108 (0) 1144 5.9 0.0 0.0 MusHbb_domain.seq 193459 193592 (30501) C B1_MM SINE/Alu (11) 136 1 397 0.0 3.8 0.0 MusHbb_domain.seq 194278 194330 (29763) + (TTA)n Simple_repeat 2 56 (0) 813 19.0 4.3 5.9 MusHbb_domain.seq 194350 194602 (29491) C Lx2B LINE/L1 (27) 6172 5924 2342 20.0 3.9 7.6 MusHbb_domain.seq 194613 195880 (28213) C Lx2 LINE/L1 (652) 6335 5079 933 18.2 0.7 8.8 MusHbb_domain.seq 195882 196155 (27938) C L1_MM LINE/L1 (30) 6568 6317 788 22.1 0.0 2.9 MusHbb_domain.seq 196155 196362 (27731) C L1 LINE/L1 (2317) 5101 4900 * 800 18.2 1.1 6.4 MusHbb_domain.seq 196382 196445 (27648) + RLTR13C LTR/Retroviral 1 67 (937) 213 6.5 0.0 0.0 MusHbb_domain.seq 196446 196476 (27617) + (CAAA)n Simple_repeat 2 32 (0) 800 18.2 1.1 6.4 MusHbb_domain.seq 196477 196598 (27495) + RLTR13C LTR/Retroviral 67 177 (827) * 2065 19.6 3.8 8.7 MusHbb_domain.seq 196598 197261 (26832) + RLTR13D LTR/Retroviral 374 1004 (0) 3457 18.6 2.5 1.0 MusHbb_domain.seq 197265 198055 (26038) C Lx2 LINE/L1 (2535) 4883 4081 324 0.0 0.0 0.0 MusHbb_domain.seq 198789 198824 (25269) + (TA)n Simple_repeat 1 36 (0) 353 17.7 0.0 0.0 MusHbb_domain.seq 199888 199949 (24144) C Lx2 LINE/L1 (3324) 4094 4033 639 26.2 13.8 3.8 MusHbb_domain.seq 200003 200242 (23851) C Lx5 LINE/L1 (0) 7055 6792 432 0.0 0.0 0.0 MusHbb_domain.seq 200407 200454 (23639) + (CA)n Simple_repeat 2 49 (0) 215 23.2 0.0 0.0 MusHbb_domain.seq 200829 200884 (23209) + (TAAA)n Simple_repeat 1 56 (0) 603 29.6 1.1 0.6 MusHbb_domain.seq 201007 201185 (22908) C B3A SINE/B2 (7) 203 24 673 25.0 5.5 2.0 MusHbb_domain.seq 202159 202358 (21735) C B3 SINE/B2 (17) 208 2 1144 14.8 7.8 4.3 MusHbb_domain.seq 203176 203432 (20661) + Lx2 LINE/L1 6715 6980 (7) 471 7.8 0.0 0.0 MusHbb_domain.seq 203632 203695 (20398) + (TA)n Simple_repeat 2 65 (0) 401 27.4 11.8 0.7 MusHbb_domain.seq 205381 205515 (18578) + RSINE1 SINE/B4 12 161 (4) 505 28.2 13.2 0.0 MusHbb_domain.seq 205647 205859 (18234) + LTR54 LTR 240 480 (30) 23 3.3 0.0 0.0 MusHbb_domain.seq 207559 207588 (16505) + AT_rich Low_complexity 1 30 (0) 415 24.2 0.0 5.8 MusHbb_domain.seq 207645 207764 (16329) C PB1D9 SINE/Alu (5) 114 2 313 32.5 4.4 0.9 MusHbb_domain.seq 207937 208050 (16043) + L1MCb LINE/L1 147 264 (5882) 24 0.0 0.0 0.0 MusHbb_domain.seq 208359 208382 (15711) + AT_rich Low_complexity 1 24 (0) 501 15.1 0.0 0.0 MusHbb_domain.seq 208473 208558 (15535) + (TA)n Simple_repeat 2 87 (0) 399 30.0 11.2 5.2 MusHbb_domain.seq 208559 208808 (15285) C L1 LINE/L1 (1992) 4154 3890 753 12.9 0.0 9.3 MusHbb_domain.seq 209098 209278 (14815) C RMER17C LTR (0) 414 218 591 4.0 0.0 0.0 MusHbb_domain.seq 209279 209352 (14741) + (GA)n Simple_repeat 2 75 (0) 753 12.9 0.0 9.3 MusHbb_domain.seq 209353 209547 (14546) C RMER17C LTR (196) 218 1 699 23.9 3.7 10.0 MusHbb_domain.seq 210651 211080 (13013) C RMER10A LTR (31) 419 17 218 8.0 0.0 6.0 MusHbb_domain.seq 211141 211190 (12903) + (TTTTG)n Simple_repeat 2 48 (0) 480 26.9 8.8 4.7 MusHbb_domain.seq 211591 211733 (12360) + B3 SINE/B2 13 167 (58) 438 5.3 0.0 0.0 MusHbb_domain.seq 211734 211790 (12303) + (CA)n Simple_repeat 2 58 (0) 480 26.9 8.8 4.7 MusHbb_domain.seq 211791 211839 (12254) + B3 SINE/B2 167 213 (12) 6225 15.2 0.6 0.5 MusHbb_domain.seq 211959 213046 (11047) C L1 LINE/L1 (2666) 4752 3664 273 31.2 15.6 0.5 MusHbb_domain.seq 214224 214415 (9678) + B4 SINE/B4 3 223 (68) 450 0.0 0.0 0.0 MusHbb_domain.seq 214492 214541 (9552) + (CA)n Simple_repeat 1 50 (0) 342 0.0 0.0 0.0 MusHbb_domain.seq 214541 214578 (9515) + (GA)n Simple_repeat 2 39 (0) * 252 14.3 0.0 0.0 MusHbb_domain.seq 216015 216056 (8037) + (TA)n Simple_repeat 2 43 (0) 181 31.8 0.0 9.1 MusHbb_domain.seq 216304 216369 (7724) C L2 LINE/L2 (199) 3073 3014 13558 2.8 0.0 0.0 MusHbb_domain.seq 218888 220481 (3612) C L1_MM LINE/L1 (12) 6586 4993 914 19.1 0.0 0.0 MusHbb_domain.seq 220674 220851 (3242) + L1 LINE/L1 3962 4139 (3279) 400 14.5 0.0 0.0 MusHbb_domain.seq 220856 220917 (3176) C RLTR10 LTR/Retroviral (0) 468 407 3534 19.9 2.9 0.5 MusHbb_domain.seq 221274 221763 (2330) + L1 LINE/L1 4134 4650 (2768) 331 3.0 6.1 1.5 MusHbb_domain.seq 221764 221829 (2264) + A-rich Low_complexity 2 70 (0) 3534 19.9 2.9 0.5 MusHbb_domain.seq 221830 222093 (2000) + L1 LINE/L1 4650 4906 (2512) 1156 17.2 0.9 1.7 MusHbb_domain.seq 222092 222324 (1769) + L1_MM LINE/L1 6352 6582 (16) * 1443 22.1 1.5 3.0 MusHbb_domain.seq 222318 222720 (1373) + L1 LINE/L1 4904 5300 (2118) 269 19.6 2.0 0.0 MusHbb_domain.seq 222719 222769 (1324) C L1_MM LINE/L1 (148) 6450 6399 * 310 17.1 0.0 4.0 MusHbb_domain.seq 222762 222837 (1256) + L1_MM LINE/L1 6496 6568 (30) 604 8.6 0.0 2.6 MusHbb_domain.seq 222849 222964 (1129) + (CAAAC)n Simple_repeat 2 114 (0) 2894 20.6 0.5 1.0 MusHbb_domain.seq 222968 224093 (0) + L1 LINE/L1 5291 5999 (86)