Listing of the 315 clusters of adjacent E. coli ORFs deleted from all three Salmonella species. The number in parentheses at the start of each line denotes the number of genes in that cluster. (1) b0005 (2) yi81_1 yi82_1 (2) yabP yabQ (4) yadC yadK yadL yadM (2) yaeI b0165 (1) yaeF (2) yafT yafU (1) ykfE (1) yafL (3) yafN yafO yafP (4) b0245 yafW ykfG yafX (2) ykfB yafY (7) ykfA perR yi91a tra8_1 b0257 ykfC trs5_1 (3) yagD afuC b0263 (4) yagB yagA yagE yagF (2) yagH yagI (12) yagJ yagK yagL yagM yagN intF yagP yagQ yagR yagS yagT yagU (7) yagV yagW yagX yagY yagZ ykgK ykgL (1) eaeH (1) ykgA (6) ykgE ykgF ykgG b0309 ykgH betA (9) betI betT yahA yahB yahC yahD yahE yahF yahG (5) yahI yahJ yahK yahL yahM (6) cynR cynT cynS cynX lacA lacY (9) lacI mhpR mhpA mhpB mhpC mhpD mhpF mhpE mhpT (1) yaiM (8) yaiO b0359 yi21_1 yi22_1 b0362 yaiP yaiS tauA (2) tauC tauD (1) phoA (1) b0392 (1) ybaA (1) ybaQ (2) ybaS ybaT (6) rhsD ybbC b0499 ybbD b0501 b0502 (1) b0538 (7) b0542 emrE ybcK ybcL ybcM ybcN ninE (2) ybcQ trs5_2 (2) ybcR ybcS (3) ybcU ybcV ybcW (1) ybcY (2) appY ompT (4) ybcH nfrA nfrB ybcZ (3) ylcB ylcC ylcD (2) yi81_2 entD (2) ybeS ybeT (1) trs5_3 (3) ybfP ybfG ybfH (7) rhsC b0701 ybfB b0703 ybfC ybfL ybfD (4) ybgO ybgP ybgQ ybgD (3) farR hrsA ybgG (4) ybhD ybhH ybhI ybhJ (1) ybhM (1) ybiA (1) ybiC (2) ybiX b0805 (1) b0834 (1) ybjH (1) aqpZ (1) ycaC (2) ycaN ycaK (7) ycbE ycbM ycbN ycbO ycbP ycbQ ycbR (2) b0941 b0942 (1) ycbF (1) appA (3) ymcB ymcC ymcD (2) sfa yccM (1) yccE (1) ycdG (5) b1008 b1009 b1010 b1011 b1012 (4) b1016 b1017 ycdO ycdB (2) ycdP ycdQ (2) ycdS ycdT (2) b1028 ycdU (1) b1044 (1) ycfT (2) b1121 ymfA (19) ymfD ymfE lit intE b1141 ymfH ymfI ymfJ b1145 b1146 ymfL ymfM ymfN ymfR ymfO b1152 b1153 ycfK b1155 (11) mcrA ycgW ycgX ycgE b1163 ycgZ ymgA ymgB ymgC b1168 b1169 (3) b1171 b1172 b1173 (1) ycgJ (1) ycgY (5) ycgC b1199 b1200 b1201 b1202 (1) chaC (2) ychG b1240 (1) kch (1) yciQ (1) ycjD (1) ymjA (5) b1297 ycjL ycjC aldH ordL (9) ycjM b1310 ycjO ycjP ycjQ b1314 ycjS ycjT ycjU (2) ompG ycjW (2) b1327 ycjZ (1) trs5_4 (4) ydaH b1337 ydaJ ydaK (2) b1345 ydaQ (1) recT (1) sieB (3) b1355 ydaR ydaS (10) trkG b1364 b1365 ydaY b1367 b1368 b1369 trs5_5 b1371 b1372 (2) b1374 ynaE (21) feaR feaB tynA maoC ydbO ynbF ydbP b1391 b1392 ydbS b1394 ydbU b1396 b1397 b1398 b1399 b1400 ydbA_1 yi22_2 yi21_2 tra8_2 (6) ydbC ydbD b1408 b1409 b1410 ynbD (2) aldA gapC_2 (2) ydcA b1420 (2) b1425 ydcH (1) b1432 (2) b1437 b1438 (1) b1440 (2) b1442 b1443 (9) b1454 b1455 rhsE ydcD b1458 b1459 ydcC ydcE b1462 (2) b1470 b1471 (1) yddM (24) b1485 b1486 b1487 b1488 b1489 b1490 b1491 xasA gadB pqqL yddB yddA b1497 b1498 b1499 b1500 b1501 b1502 b1503 b1504 b1505 b1506 hipA hipB (1) ydeK (1) b1519 (2) uxaB b1522 (1) b1527 (1) marB (1) ydeH (2) ydfK b1545 (1) ydfO (1) b1551 (3) b1554 b1555 b1556 (3) b1559 b1560 rem (6) b1565 flxA b1567 b1568 dicC dicA (2) ydfB ydfC (4) dicB ydfD ydfE b1578 (1) ydgB (8) uidC uidB uidA uidR hdhA malI malX malY (1) lhr (1) b1657 (1) b1664 (2) b1668 b1669 (4) b1671 b1672 b1673 b1674 (2) b1720 b1721 (1) b1730 (1) b1742 (9) ydjX ydjY ydjZ ynjA b1754 b1755 b1756 b1757 b1758 (1) b1762 (8) ydjE b1770 b1771 b1772 b1773 ydjJ b1775 b1776 (1) yeaI (1) yeaP (5) yeaT yeaU yeaV yeaW yeaX (1) yecK (1) yecT (1) tap (1) araH_1 (1) araF (1) b1903 (1) fliT (5) yedL b1933 yedN yedM b1936 (1) yedU (3) b1978 b1979 b1980 (1) nac (13) trs5_6 b1995 yi22_3 yi21_3 b1998 yeeP flu b2001 yeeS yeeT yeeU yeeV yeeW (2) yeeD yeeE (1) yefM (8) trs5_7 yefJ wbbK wbbJ wbbI wbbH glf rfbX (4) b2070 b2071 b2072 b2073 (1) b2080 (1) b2085 (1) yegX (1) yehD (8) molR_1 molR_2 molR_3 yehI yehL yehM yehP yehQ (7) yeiI yeiJ yeiK yeiL yeiM yeiN yeiC (3) yejO b2191 trs5_8 (1) yojH (1) atoS (3) atoD atoA atoE (6) b2225 b2226 b2227 b2228 b2229 yfaA (1) yfaL (1) inaA (1) elaD (5) yfbL yfbM yfbN b2274 b2275 (1) folX (1) b2332 (1) b2345 (1) intC (1) b2352 (9) yfdL yfdM yfdN yfdO b2359 b2360 b2361 b2362 b2363 (8) evgA evgS yfdE b2372 b2373 b2374 b2375 b2376 (8) b2380 b2381 b2382 b2383 b2384 b2385 b2386 b2387 (1) yi81_3 (1) b2420 (1) yfeT (9) b2442 b2443 b2444 b2445 b2446 b2447 b2448 b2449 b2450 (1) ypfH (2) hyfA hyfB (3) hyfD hyfE hyfF (1) hyfR (14) hcaR hcaA1 hcaA2 hcaC hcaB hcaD yphA yphB yphC yphD yphE yphF yphG yphH (1) yfiL (1) yfiB (10) yfjH alpA yfjI yfjJ yfjK yfjL yfjM yfjN yfjO yfjP (18) yfjR b2635 b2636 yfjT b2638 b2639 b2640 b2641 yfjW yfjX yfjY yfjZ ypjF ypjA b2648 b2649 b2650 b2651 (5) b2654 b2655 b2656 b2657 b2658 (1) ygaH (2) ascG ascF (1) b2740 (6) b2756 b2757 b2758 ygcK b2760 ygcB (11) ygcN ygcO ygcP ygcQ ygcR ygcS b2772 ygcU ygcW yqcE ygcE (1) ygcG (2) chpA chpR (18) yqeH yqeI yqeJ yqeK ygeF ygeG ygeH b2853 b2854 ygeK b2856 b2857 b2858 b2859 yi22_4 yi21_4 b2862 b2863 (16) b2866 ygeT b2868 ygeV ygeW ygeX ygeY b2873 yqeA b2875 b2876 ygfJ b2878 b2879 b2880 b2881 (1) ygfP (1) ygfU (1) ygfF (1) yqfE (5) sbm ygfD ygfG ygfH ygfI (2) yggC yggD (2) b2931 yggP (1) cmtB (5) yghD yghE b2970 b2971 b2972 (11) glcB glcG glcF glcD glcC b2981 trs5_9 yghQ yghR yghS yghT (2) b2999 b3000 (2) yqhG yqhH (3) b3020 b3021 b3022 (1) b3027 (6) ygiL yi21_5 yi22_5 yqiG yqiH yqiI (1) ygiP (7) ygjH ebgR ebgA ebgC ygjI ygjJ ygjK (2) ygjM ygjN (1) uxaA (1) exuR (1) yhaI (2) yhaB yhaC (3) sohA yhaV agaR (3) agaW agaA agaS (8) agaB agaC agaD agaI yraH yraI yraJ yraK (1) yraQ (1) yhbX (6) gltF yhcA yhcD yhcE trs5_10 yhcF (1) yhcL (1) b3254 (3) yhdW yhdX yhdY (14) pinO yheD yheE yheF yheG hofF hofG hofH yheH yheI yheJ yheK pshM hofD (1) yheB (14) yhfM yhfN yhfO yhfP yhfQ yhfR yhfS yhfT yhfU yhfV yhfW yhfX yhfY yhfZ (1) yzgL (1) yhgN (2) yhhZ yrhA (1) yrhB (2) nikA nikB (1) nikD (3) rhsB yhhH yhhI (4) yhiJ yhiK yhiL yhiM (2) arsR arsB (9) yhiS trs5_11 slp yhiF yhiD hdeB hdeA hdeD yhiE (3) yhiW yhiX gadA (1) yhjX (2) yi5A t150 (2) yiaA yiaB (1) xylF (1) xylH (4) yiaT yiaU yiaV yiaW (1) yiaY (6) rhsA yibA yibJ yibG yibH yibI (1) htrL (2) rfaL rfaK (1) rfaS (1) dinD (1) yicP (8) yidI yidJ yidK yidL glvG glvB glvC yidP (1) yidS (1) yidB (2) tnaL tnaA (5) yieI yieJ yieK yieL yieC (2) bglF bglG (2) b3776 yifN (1) aslA (1) b3814 (1) yihF (3) yihL yihM yihN (4) frvR frvX frvB frvA (2) yiiS yiiT (1) yiiX (1) yijE (1) htrC (1) yjaA (1) arp (1) yjbI (2) yjbL yjbM (1) yjcF (7) yjcP yjcQ yjcR yjcS yjcT yjcU yjcV (5) yjcX rpiR rpiB phnQ phnP (11) phnM phnL phnK phnJ phnI phnH phnG phnF b4103 phnE phnD (2) yjdA yjcZ (1) yjdF (3) yjdI yjdJ yjdK (1) ampC (2) yjfZ ytfA (1) ytfI (2) chpS chpB (2) ytfQ ytfR (2) ytfT yjfF (1) yjgG (1) yjgJ (1) yjgL (1) yjgR (7) yi21_6 yi22_6 yjgW yjgX yjgY yjgZ yi41 (6) yjhD yjhE yi91b tra8_3 b4285 b4286 (6) fecD fecC fecB fecA fecR fecI (1) yjhU (3) yjhG yjhH yjhI (1) yjhQ (5) yjhS yjhT yjhA fimB fimE (1) fimI (3) fimF fimG fimH (2) yjiC yjiD (1) yjiI (3) yjiK yjiL yjiM (1) yjiR (2) mcrC mcrB (2) yjiZ yjjM