Listing of the 394 clusters of adjacent E. coli ORFs deleted from all three
Salmonella species. The number in parentheses at the start of each line
denotes the number of genes in that cluster.


(1) b0005
(2) yi81_1 yi82_1
(2) yabP yabQ
(1) yabM
(1) fruL
(2) hofC hofB
(1) yacH
(1) yadD
(7) yadC yadK yadL yadM htrE ecpD yadN
(2) yaeI b0165
(1) yaeF
(1) yafE
(2) yafT yafU
(1) ykfE
(1) yafQ
(4) yafL yafM fhiA mbhA
(3) yafN yafO yafP
(19) b0245 yafW ykfG yafX ykfF ykfB yafY yafZ ykfA perR yi91a tra8_1 b0257 ykfC trs5_1 ykfD yagD afuC b0263
(7) yagB yagA yagE yagF yagG yagH yagI
(20) yagJ yagK yagL yagM yagN intF yagP yagQ yagR yagS yagT yagU ykgJ yagV yagW yagX yagY yagZ ykgK ykgL
(1) eaeH
(22) ykgA ykgB b0302 ykgI ykgC ykgD ykgE ykgF ykgG b0309 ykgH betA betB betI betT yahA yahB yahC yahD yahE yahF yahG
(5) yahI yahJ yahK yahL yahM
(1) b0332
(6) cynR cynT cynS cynX lacA lacY
(9) lacI mhpR mhpA mhpB mhpC mhpD mhpF mhpE mhpT
(1) yaiM
(12) yaiN yaiO b0359 yi21_1 yi22_1 b0362 yaiP yaiS tauA tauB tauC tauD
(1) b0370
(1) phoA
(1) aroL
(1) b0392
(1) sbcC
(1) yajI
(2) ybaA ylaB
(1) ybaM
(1) ybaC
(2) ybaP ybaQ
(2) ybaS ybaT
(1) tesA
(6) rhsD ybbC b0499 ybbD b0501 b0502
(1) ybbV
(6) sfmA sfmC sfmD sfmH sfmF fimZ
(1) b0538
(11) b0542 emrE ybcK ybcL ybcM ybcN ninE ybcO rus ybcQ trs5_2
(2) ybcR ybcS
(3) ybcU ybcV ybcW
(1) ybcY
(12) appY ompT envY ybcH nfrA nfrB ybcZ ylcA ylcB ylcC ylcD ybdE
(2) yi81_2 entD
(1) fes
(1) ybdO
(1) b0609
(1) rna
(1) ybeF
(1) phpB
(6) ybeQ ybeR ybeS ybeT ybeU ybeV
(1) trs5_3
(3) ybfP ybfG ybfH
(8) rhsC b0701 ybfB b0703 ybfC ybfL ybfD ybgA
(4) ybgO ybgP ybgQ ybgD
(1) b0725
(3) farR hrsA ybgG
(1) ybgE
(1) tolA
(4) ybhD ybhH ybhI ybhJ
(1) bioD
(1) ybhM
(1) ybiA
(1) ybiC
(2) ybiX b0805
(1) mipB
(1) b0834
(1) ybjH
(1) ybjC
(1) aqpZ
(1) ycaC
(2) ycaN ycaK
(1) ycaL
(1) ycaI
(1) ompF
(12) ycbE ycbM ycbN ycbO ycbP ycbQ ycbR ycbS b0941 b0942 b0943 ycbF
(2) hyaE hyaF
(8) appA yccC yccY yccZ ymcA ymcB ymcC ymcD
(3) sfa yccM torS
(1) torD
(1) yccE
(8) ycdF ycdG b1007 b1008 b1009 b1010 b1011 b1012
(4) b1016 b1017 ycdO ycdB
(2) ycdP ycdQ
(2) ycdS ycdT
(2) b1028 ycdU
(1) ycdW
(1) b1044
(1) yceO
(1) flgA
(1) ycfT
(2) b1121 ymfA
(19) ymfD ymfE lit intE b1141 ymfH ymfI ymfJ b1145 b1146 ymfL ymfM ymfN ymfR ymfO b1152 b1153 ycfK b1155
(15) mcrA ycgW ycgX ycgE b1163 ycgZ ymgA ymgB ymgC b1168 b1169 b1170 b1171 b1172 b1173
(1) ycgJ
(1) umuD
(1) ycgY
(5) ycgC b1199 b1200 b1201 b1202
(1) chaC
(2) ychG b1240
(1) kch
(1) yciQ
(1) yciW
(1) ycjD
(8) ymjA ycjJ b1297 ycjL ycjC aldH ordL goaG
(13) pspE ycjM b1310 ycjO ycjP ycjQ b1314 ycjS ycjT ycjU ycjV ompG ycjW
(2) b1327 ycjZ
(1) trs5_4
(4) ydaH b1337 ydaJ ydaK
(1) b1341
(2) b1345 ydaQ
(2) recT recE
(5) sieB b1354 b1355 ydaR ydaS
(1) ydaU
(13) trkG b1364 b1365 ydaY b1367 b1368 b1369 trs5_5 b1371 b1372 ynaC b1374 ynaE
(1) hslJ
(30) ynbE ydbL feaR feaB tynA maoC ydbO ynbF ydbP b1391 b1392 ydbS b1394 ydbU b1396 b1397 b1398 b1399 b1400 ydbA_1 yi22_2 yi21_2 tra8_2 ydbA_2 ydbC ydbD b1408 b1409 b1410 ynbD
(4) ydcF aldA gapC_2 gapC_1
(4) ydcA b1420 trg b1422
(4) b1425 ydcH rimL b1428
(2) b1432 b1433
(3) b1436 b1437 b1438
(4) b1440 b1441 b1442 b1443
(1) b1445
(1) b1450
(9) b1454 b1455 rhsE ydcD b1458 b1459 ydcC ydcE b1462
(3) b1470 b1471 b1472
(1) yddM
(28) b1483 b1484 b1485 b1486 b1487 b1488 b1489 b1490 b1491 xasA gadB pqqL yddB yddA b1497 b1498 b1499 b1500 b1501 b1502 b1503 b1504 b1505 b1506 hipA hipB b1509 ydeK
(1) ydeW
(1) ydeZ
(1) b1519
(2) uxaB b1522
(2) yneJ b1527
(1) marB
(2) ydeF ydeH
(1) ydeJ
(4) ydfK b1545 ydfM b1547
(3) ydfO b1550 b1551
(3) b1554 b1555 b1556
(3) b1559 b1560 rem
(8) relE relB b1565 flxA b1567 b1568 dicC dicA
(8) ydfB ydfC dicF dicB ydfD ydfE b1578 b1579
(1) b1582
(2) ynfC b1586
(1) asr
(1) ydgB
(8) uidC uidB uidA uidR hdhA malI malX malY
(1) lhr
(1) b1657
(1) b1664
(8) b1667 b1668 b1669 ydhU b1671 b1672 b1673 b1674
(1) b1689
(1) ydiR
(1) ydiE
(1) b1707
(2) b1720 b1721
(1) b1730
(2) b1741 b1742
(9) ydjX ydjY ydjZ ynjA b1754 b1755 b1756 b1757 b1758
(1) b1762
(8) ydjE b1770 b1771 b1772 b1773 ydjJ b1775 b1776
(2) yeaD b1781
(2) yeaI yeaJ
(1) b1788
(3) yeaO yoaF yeaP
(5) yeaT yeaU yeaV yeaW yeaX
(1) b1810
(1) b1825
(1) pphA
(1) b1840
(1) yebB
(2) bisZ yecK
(1) yecT
(1) tap
(3) araH_1 araG araF
(2) b1903 b1904
(4) fliC fliD fliS fliT
(6) yedK yedL b1933 yedN yedM b1936
(1) fliK
(1) fliO
(2) b1955 b1956
(2) yedJ b1963
(1) b1965
(4) yedU yedV yedW b1970
(2) b1973 yodB
(4) b1978 b1979 b1980 shiA
(2) cbl nac
(2) erfK cobT
(13) trs5_6 b1995 yi22_3 yi21_3 b1998 yeeP flu b2001 yeeS yeeT yeeU yeeV yeeW
(1) sbmC
(2) yeeD yeeE
(1) yefM
(1) wzzB
(9) trs5_7 yefJ wbbK wbbJ wbbI wbbH glf rfbX rfbC
(4) b2070 b2071 b2072 b2073
(1) b2080
(4) ogrK b2083 b2084 b2085
(2) gatR_2 gatD
(3) gatA gatZ gatY
(1) yegX
(1) thiM
(2) b2107 yehA
(3) yehC yehD yehE
(8) molR_1 molR_2 molR_3 yehI yehL yehM yehP yehQ
(7) yeiI yeiJ yeiK yeiL yeiM yeiN yeiC
(1) yeiQ
(1) rtn
(3) yejO b2191 trs5_8
(1) yojH
(12) atoS atoC atoD atoA atoE atoB b2225 b2226 b2227 b2228 b2229 yfaA
(1) yfaL
(2) inaA yfaH
(1) yfaD
(1) ais
(3) b2257 b2258 pmrD
(7) elaD yfbK yfbL yfbM yfbN b2274 b2275
(1) folX
(1) div
(8) b2332 b2333 b2334 b2335 yfcS b2337 yfcU b2339
(1) b2345
(1) intC
(1) b2352
(9) yfdL yfdM yfdN yfdO b2359 b2360 b2361 b2362 b2363
(11) emrY emrK evgA evgS yfdE b2372 b2373 b2374 b2375 b2376 b2377
(8) b2380 b2381 b2382 b2383 b2384 b2385 b2386 b2387
(2) yi81_3 yfeA
(1) pdxK
(1) b2420
(4) yfeT yfeU b2429 b2430
(9) b2442 b2443 b2444 b2445 b2446 b2447 b2448 b2449 b2450
(2) ypfH ypfI
(12) hyfA hyfB hyfC hyfD hyfE hyfF hyfG hyfH hyfI b2490 hyfR focB
(1) b2503
(1) b2510
(1) b2534
(14) hcaR hcaA1 hcaA2 hcaC hcaB hcaD yphA yphB yphC yphD yphE yphF yphG yphH
(1) yfhG
(4) yfiL b2603 yfiN yfiB
(30) intA yfjH alpA yfjI yfjJ yfjK yfjL yfjM yfjN yfjO yfjP yfjQ yfjR b2635 b2636 yfjT b2638 b2639 b2640 b2641 yfjW yfjX yfjY yfjZ ypjF ypjA b2648 b2649 b2650 b2651
(5) b2654 b2655 b2656 b2657 b2658
(1) ygaP
(2) b2682 ygaH
(3) ascG ascF ascB
(1) hypA
(1) pphB
(1) b2740
(1) ygbE
(6) b2756 b2757 b2758 ygcK b2760 ygcB
(11) ygcN ygcO ygcP ygcQ ygcR ygcS b2772 ygcU ygcW yqcE ygcE
(1) ygcG
(2) chpA chpR
(2) ppdB ppdA
(18) yqeH yqeI yqeJ yqeK ygeF ygeG ygeH b2853 b2854 ygeK b2856 b2857 b2858 b2859 yi22_4 yi21_4 b2862 b2863
(18) b2866 ygeT b2868 ygeV ygeW ygeX ygeY b2873 yqeA b2875 b2876 ygfJ b2878 b2879 b2880 b2881 ygfO ygfP
(5) ygfR ygfS ygfT ygfU b2889
(1) ygfF
(1) yqfE
(5) sbm ygfD ygfG ygfH ygfI
(7) yggC yggD yggF b2931 yggP cmtA cmtB
(5) yghD yghE b2970 b2971 b2972
(12) yghK glcB glcG glcF glcD glcC b2981 trs5_9 yghQ yghR yghS yghT
(3) b2999 b3000 b3001
(1) b3004
(2) yqhG yqhH
(4) b3020 b3021 b3022 b3023
(1) b3027
(1) ygiA
(7) b3042 ygiL yi21_5 yi22_5 yqiG yqiH yqiI
(1) b3050
(4) ygiP ttdA ttdB ygjE
(1) yqjH
(7) ygjH ebgR ebgA ebgC ygjI ygjJ ygjK
(2) ygjM ygjN
(1) ygjQ
(4) uxaA uxaC exuT exuR
(1) yhaI
(1) yhaL
(1) yhaR
(4) tdcR yhaB yhaC b3122
(1) yhaU
(17) sohA yhaV agaR agaZ agaV agaW agaA agaS agaY agaB agaC agaD agaI yraH yraI yraJ yraK
(1) yraQ
(1) yhbX
(6) gltF yhcA yhcD yhcE trs5_10 yhcF
(1) yhcH
(1) yhcL
(1) b3254
(2) yhdU envR
(4) yhdW yhdX yhdY yhdZ
(1) smf_1
(14) pinO yheD yheE yheF yheG hofF hofG hofH yheH yheI yheJ yheK pshM hofD
(1) yheB
(14) yhfM yhfN yhfO yhfP yhfQ yhfR yhfS yhfT yhfU yhfV yhfW yhfX yhfY yhfZ
(3) yrfB yrfC yrfD
(1) yhgE
(1) yhgA
(1) yhgJ
(1) yzgL
(1) yhgN
(2) yhhZ yrhA
(1) yrhB
(1) yhhA
(5) nikA nikB nikC nikD nikE
(3) rhsB yhhH yhhI
(4) yhiJ yhiK yhiL yhiM
(17) arsR arsB arsC yhiS trs5_11 slp yhiF yhiD hdeB hdeA hdeD yhiE yhiU yhiV yhiW yhiX gadA
(1) yhjC
(1) yhjX
(2) yi5A t150
(2) yiaA yiaB
(3) xylF xylG xylH
(4) yiaT yiaU yiaV yiaW
(1) yiaY
(6) rhsA yibA yibJ yibG yibH yibI
(1) htrL
(8) rfaL rfaK rfaZ rfaY rfaJ rfaI rfaB rfaS
(1) dinD
(1) yicF
(1) yicK
(1) nlpA
(2) yicO yicP
(1) yidF
(8) yidI yidJ yidK yidL glvG glvB glvC yidP
(1) yidS
(1) yidX
(1) yidB
(3) tnaL tnaA tnaB
(8) yieI yieJ yieK yieL yieC bglB bglF bglG
(2) b3776 yifN
(2) aslB aslA
(1) b3808
(2) b3814 yigE
(1) yigG
(1) yihF
(3) yihL yihM yihN
(1) yihR
(2) yiiE yiiF
(5) yiiG frvR frvX frvB frvA
(2) kdgT yiiM
(2) yiiS yiiT
(1) yiiX
(2) yijE yijF
(1) htrC
(1) yjaI
(1) yjaA
(1) arp
(1) xylE
(1) yjbI
(2) yjbL yjbM
(1) yjcC
(1) yjcF
(1) nrfG
(13) yjcP yjcQ yjcR yjcS yjcT yjcU yjcV yjcW yjcX rpiR rpiB phnQ phnP
(13) phnN phnM phnL phnK phnJ phnI phnH phnG phnF b4103 phnE phnD phnC
(2) yjdA yjcZ
(1) yjdF
(3) yjdI yjdJ yjdK
(1) yjdL
(1) cadC
(1) yjeH
(1) yjeJ
(1) sugE
(1) ampC
(2) yjeN yjeO
(1) yjfI
(2) yjfZ ytfA
(1) ytfI
(2) chpS chpB
(5) ytfQ ytfR ytfS ytfT yjfF
(1) yjgG
(3) yjgI b4250 yjgJ
(1) yjgL
(1) yjgN
(1) yjgR
(23) intB yi21_6 yi22_6 yjgW yjgX yjgY yjgZ yi41 yjhB yjhC yjhD yjhE yi91b tra8_3 b4285 b4286 fecE fecD fecC fecB fecA fecR fecI
(5) yjhU yjhF yjhG yjhH yjhI
(1) sgcE
(15) yjhQ yjhR yjhS yjhT yjhA fimB fimE fimA fimI fimC fimD fimF fimG fimH gntP
(2) yjiC yjiD
(5) yjiI yjiJ yjiK yjiL yjiM
(4) yjiQ yjiR yjiS yjiT
(3) mcrD mcrC mcrB
(1) hsdS
(1) mrr
(3) yjiZ yjjM yjjN
(1) yjjA
(2) yjjQ bglJ