#:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1052 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig14_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1052 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig14_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1138 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig18_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1138 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig18_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1014 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig21_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1014 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig21_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1131 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig25_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1131 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig25_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1029 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig53_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1029 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig53_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1071 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig134_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1071 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig134_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1024 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig139_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1024 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig139_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1256 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig395_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1256 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig395_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1116 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig396_2.2" } a { s 908 b 395555 497 e 396121 1067 l 395555 497 395779 721 54 l 395781 722 395795 736 53 l 395796 741 396098 1043 63 l 396099 1045 396121 1067 70 } a { s 3806 b 530402 8 e 531420 1023 l 530402 8 530461 67 72 l 530484 68 530490 74 71 l 530491 97 530879 485 59 l 530883 486 531420 1023 79 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1116 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig396_2.2 (reverse complement)" } a { s 10788 b 2594531 1 e 2595645 1116 l 2594531 1 2594605 75 96 l 2594606 77 2595645 1116 99 } a { s 2992 b 3563251 96 e 3564179 1024 l 3563251 96 3563768 613 75 l 3563773 614 3563777 618 80 l 3563778 626 3563790 638 77 l 3563794 639 3564179 1024 57 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1337 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig401_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1337 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig401_2.2 (reverse complement)" } a { s 850 b 1055094 104 e 1055278 288 l 1055094 104 1055278 288 73 } a { s 11926 b 2785801 2 e 2787136 1337 l 2785801 2 2785867 68 70 l 2785869 69 2786155 355 89 l 2786156 357 2787136 1337 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1161 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig409_2.2" } a { s 11290 b 4655996 1 e 4657156 1161 l 4655996 1 4657156 1161 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1161 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig409_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1269 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig413_2.2" } a { s 12350 b 3724635 3 e 3725901 1269 l 3724635 3 3725901 1269 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1269 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig413_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1345 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig419_2.2" } a { s 3510 b 66388 1 e 66881 502 l 66388 1 66650 263 96 l 66652 264 66661 273 80 l 66662 277 66743 358 77 l 66744 365 66881 502 78 } a { s 4468 b 3521572 1 e 3522101 524 l 3521572 1 3521906 335 94 l 3521910 336 3522075 501 97 l 3522079 502 3522101 524 70 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1345 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig419_2.2 (reverse complement)" } a { s 12522 b 829038 1 e 830378 1345 l 829038 1 829659 622 100 l 829660 624 830027 991 97 l 830028 995 830378 1345 93 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1042 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig423_2.2" } a { s 9714 b 1360403 33 e 1361415 1042 l 1360403 33 1360416 46 93 l 1360419 47 1361351 979 99 l 1361353 980 1361415 1042 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1042 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig423_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1324 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig425_2.2" } a { s 250 b 201362 28 e 201396 62 l 201362 28 201396 62 86 } a { s 260 b 1256702 257 e 1256737 292 l 1256702 257 1256737 292 86 } a { s 3376 b 1431921 89 e 1433162 1321 l 1431921 89 1432198 366 69 l 1432205 367 1432433 595 64 l 1432434 614 1432458 638 64 l 1432480 639 1432956 1115 65 l 1432960 1116 1432980 1136 52 l 1432981 1140 1433080 1239 69 l 1433084 1240 1433103 1259 65 l 1433104 1263 1433162 1321 71 } a { s 230 b 2280058 28 e 2280092 62 l 2280058 28 2280092 62 83 } a { s 300 b 3470096 26 e 3470135 65 l 3470096 26 3470135 65 88 } a { s 272 b 3713210 4 e 3713275 65 l 3713210 4 3713234 28 64 l 3713239 29 3713275 65 86 } a { s 260 b 4149356 28 e 4149393 65 l 4149356 28 4149393 65 84 } a { s 230 b 4771213 1155 e 4771243 1185 l 4771213 1155 4771243 1185 87 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1324 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig425_2.2 (reverse complement)" } a { s 12680 b 90794 1 e 92117 1324 l 90794 1 92117 1324 98 } a { s 250 b 1367377 1264 e 1367427 1324 l 1367377 1264 1367410 1297 85 l 1367411 1308 1367427 1324 76 } a { s 310 b 2451427 1260 e 2451467 1300 l 2451427 1260 2451467 1300 88 } a { s 290 b 3207961 1259 e 3207999 1297 l 3207961 1259 3207999 1297 87 } a { s 270 b 3336849 1258 e 3336889 1298 l 3336849 1258 3336889 1298 83 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1112 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig437_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1112 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig437_2.2 (reverse complement)" } a { s 9860 b 2362299 6 e 2363402 1112 l 2362299 6 2362323 30 84 l 2362324 33 2362350 59 78 l 2362351 61 2362401 111 84 l 2362402 113 2362475 186 89 l 2362477 187 2363402 1112 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1357 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig448_2.2" } a { s 12956 b 3031443 1 e 3032794 1357 l 3031443 1 3031516 74 97 l 3031517 76 3031529 88 92 l 3031530 90 3031568 128 100 l 3031569 130 3031985 546 99 l 3031987 547 3031991 551 80 l 3031992 555 3032794 1357 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1357 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig448_2.2 (reverse complement)" } a { s 230 b 3621163 1188 e 3621197 1222 l 3621163 1188 3621197 1222 83 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1205 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig451_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1205 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig451_2.2 (reverse complement)" } a { s 11790 b 270084 1 e 271288 1205 l 270084 1 271288 1205 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1004 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig463_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1004 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig463_2.2 (reverse complement)" } a { s 9638 b 2522928 1 e 2523932 1004 l 2522928 1 2522968 41 98 l 2522970 42 2523932 1004 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1062 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig465_2.2" } a { s 10172 b 467142 1 e 468203 1062 l 467142 1 467194 53 100 l 467195 55 467249 109 95 l 467250 111 468145 1006 99 l 468147 1007 468185 1045 100 l 468187 1046 468203 1062 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1062 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig465_2.2 (reverse complement)" } a { s 1410 b 3808104 673 e 3808485 1054 l 3808104 673 3808127 696 67 l 3808130 697 3808155 722 85 l 3808157 723 3808176 742 65 l 3808177 745 3808299 867 65 l 3808300 869 3808368 937 87 l 3808370 938 3808384 952 67 l 3808385 954 3808412 981 79 l 3808414 982 3808440 1008 85 l 3808441 1010 3808485 1054 84 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1290 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig470_2.2" } a { s 402 b 2127970 576 e 2128450 1049 l 2127970 576 2127982 588 100 l 2127984 589 2128048 653 58 l 2128075 654 2128092 671 72 l 2128093 698 2128263 868 52 l 2128264 875 2128287 898 67 l 2128288 903 2128298 913 73 l 2128315 914 2128450 1049 65 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1290 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig470_2.2 (reverse complement)" } a { s 12164 b 3124551 16 e 3125824 1290 l 3124551 16 3124691 156 97 l 3124692 158 3124711 177 90 l 3124712 179 3125235 702 99 l 3125237 703 3125824 1290 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1263 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig478_2.2" } a { s 324 b 2635633 889 e 2635829 1085 l 2635633 889 2635707 963 69 l 2635717 964 2635735 982 58 l 2635736 992 2635829 1085 59 } a { s 380 b 2636499 891 e 2636570 962 l 2636499 891 2636570 962 76 } a { s 370 b 2637406 892 e 2637588 1074 l 2637406 892 2637588 1074 60 } a { s 260 b 2638228 892 e 2638309 973 l 2638228 892 2638309 973 66 } a { s 280 b 2639062 892 e 2639123 953 l 2639062 892 2639123 953 73 } a { s 308 b 2639870 896 e 2640047 1079 l 2639870 896 2639930 956 69 l 2639931 963 2640047 1079 56 } a { s 12014 b 2641360 1 e 2642619 1263 l 2641360 1 2641812 453 98 l 2641813 457 2642619 1263 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1263 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig478_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1070 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig482_2.2" } a { s 10620 b 4415067 1 e 4416136 1070 l 4415067 1 4416136 1070 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1070 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig482_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1212 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig484_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1212 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig484_2.2 (reverse complement)" } a { s 11668 b 1941867 4 e 1943076 1212 l 1941867 4 1941918 55 96 l 1941920 56 1943076 1212 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1135 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig501_2.2" } a { s 446 b 255040 1011 e 255147 1118 l 255040 1011 255080 1051 73 l 255082 1052 255099 1069 89 l 255100 1071 255147 1118 75 } a { s 318 b 1368571 1071 e 1368635 1134 l 1368571 1071 1368619 1119 80 l 1368621 1120 1368635 1134 80 } a { s 488 b 2981500 1020 e 2981598 1119 l 2981500 1020 2981549 1069 78 l 2981550 1071 2981598 1119 78 } a { s 426 b 3374384 1020 e 3374495 1131 l 3374384 1020 3374430 1066 70 l 3374431 1068 3374482 1119 77 l 3374484 1120 3374495 1131 83 } a { s 336 b 3453495 1016 e 3453583 1104 l 3453495 1016 3453537 1058 70 l 3453539 1059 3453550 1070 67 l 3453551 1072 3453583 1104 88 } a { s 396 b 3734388 1018 e 3734488 1118 l 3734388 1018 3734410 1040 96 l 3734412 1041 3734438 1067 67 l 3734439 1069 3734488 1118 72 } a { s 456 b 3877206 1020 e 3877304 1118 l 3877206 1020 3877242 1056 78 l 3877244 1057 3877257 1070 86 l 3877258 1072 3877304 1118 79 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1135 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig501_2.2 (reverse complement)" } a { s 406 b 252885 17 e 252984 116 l 252885 17 252932 64 79 l 252933 66 252946 79 86 l 252948 80 252984 116 70 } a { s 556 b 801586 6 e 801693 111 l 801586 6 801597 17 83 l 801599 18 801658 77 87 l 801660 78 801693 111 74 } a { s 522 b 2634098 5 e 2634224 131 l 2634098 5 2634109 16 92 l 2634111 17 2634163 69 77 l 2634164 71 2634170 77 100 l 2634172 78 2634208 114 78 l 2634209 116 2634224 131 81 } a { s 404 b 2895762 5 e 2895874 116 l 2895762 5 2895773 16 83 l 2895775 17 2895822 64 79 l 2895823 66 2895843 86 67 l 2895845 87 2895874 116 77 } a { s 512 b 2928019 5 e 2928148 134 l 2928019 5 2928030 16 92 l 2928032 17 2928084 69 75 l 2928085 71 2928093 79 100 l 2928095 80 2928129 114 77 l 2928130 116 2928148 134 79 } a { s 308 b 4215476 18 e 4215576 118 l 4215476 18 4215525 67 74 l 4215526 69 4215540 83 80 l 4215544 84 4215552 92 67 l 4215553 95 4215576 118 79 } a { s 298 b 4297352 7 e 4297471 122 l 4297352 7 4297362 17 82 l 4297367 18 4297413 64 74 l 4297414 66 4297427 79 64 l 4297429 80 4297471 122 67 } a { s 11048 b 4722000 1 e 4723135 1135 l 4722000 1 4722018 19 100 l 4722020 20 4723135 1135 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1127 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig511_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1127 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig511_2.2 (reverse complement)" } a { s 11050 b 775182 1 e 776308 1127 l 775182 1 776308 1127 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1286 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig512_2.2" } a { s 500 b 5028 19 e 5105 96 l 5028 19 5105 96 82 } a { s 240 b 227729 63 e 227762 96 l 227729 63 227762 96 85 } a { s 320 b 1011928 12 e 1011965 49 l 1011928 12 1011965 49 92 } a { s 240 b 1880526 18 e 1880555 47 l 1880526 18 1880555 47 90 } a { s 230 b 2796353 65 e 2796389 101 l 2796353 65 2796389 101 81 } a { s 250 b 2987699 63 e 2987731 95 l 2987699 63 2987731 95 88 } a { s 316 b 3215061 17 e 3215173 104 l 3215061 17 3215093 49 97 l 3215118 50 3215129 61 58 l 3215132 62 3215155 85 71 l 3215156 87 3215173 104 83 } a { s 230 b 3218375 68 e 3218405 98 l 3218375 68 3218405 98 87 } a { s 368 b 3944482 17 e 3944544 80 l 3944482 17 3944514 49 88 l 3944515 51 3944544 80 80 } a { s 230 b 4048077 65 e 4048111 99 l 4048077 65 4048111 99 83 } a { s 260 b 4059912 18 e 4059945 51 l 4059912 18 4059945 51 88 } a { s 290 b 4157762 60 e 4157830 128 l 4157762 60 4157830 128 71 } a { s 12396 b 4292274 1 e 4293561 1286 l 4292274 1 4293486 1213 99 l 4293488 1214 4293516 1242 97 l 4293518 1243 4293561 1286 95 } a { s 506 b 4636262 16 e 4636354 101 l 4636262 16 4636327 81 83 l 4636335 82 4636354 101 85 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1286 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig512_2.2 (reverse complement)" } a { s 240 b 123379 1187 e 123416 1224 l 123379 1187 123416 1224 82 } a { s 334 b 170790 1207 e 170849 1269 l 170790 1207 170813 1230 67 l 170814 1234 170849 1269 94 } a { s 314 b 1361762 1207 e 1361821 1269 l 1361762 1207 1361786 1231 72 l 1361787 1235 1361821 1269 89 } a { s 352 b 3508019 1173 e 3508108 1266 l 3508019 1173 3508065 1219 79 l 3508066 1223 3508097 1254 69 l 3508098 1256 3508108 1266 91 } a { s 298 b 3867851 1179 e 3867960 1269 l 3867851 1179 3867908 1236 69 l 3867929 1237 3867945 1253 88 l 3867946 1255 3867960 1269 87 } a { s 296 b 3870572 1208 e 3870628 1271 l 3870572 1208 3870597 1233 69 l 3870598 1241 3870628 1271 94 } a { s 230 b 4201657 1191 e 4201689 1223 l 4201657 1191 4201689 1223 85 } a { s 230 b 4356545 1186 e 4356581 1222 l 4356545 1186 4356581 1222 81 } a { s 270 b 4786236 1191 e 4786270 1225 l 4786236 1191 4786270 1225 89 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1061 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig522_2.2" } a { s 10290 b 3523007 1 e 3524067 1061 l 3523007 1 3524067 1061 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1061 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig522_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1087 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig529_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1087 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig529_2.2 (reverse complement)" } a { s 10578 b 3908526 1 e 3909611 1087 l 3908526 1 3909502 977 99 l 3909503 979 3909611 1087 95 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1258 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig534_2.2" } a { s 12260 b 669460 1 e 670717 1258 l 669460 1 670717 1258 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1258 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig534_2.2 (reverse complement)" } a { s 510 b 458408 11 e 458568 171 l 458408 11 458568 171 66 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1193 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig536_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1193 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig536_2.2 (reverse complement)" } a { s 11870 b 177261 5 e 178449 1193 l 177261 5 178449 1193 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1150 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig539_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1150 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig539_2.2 (reverse complement)" } a { s 10918 b 430574 7 e 431718 1150 l 430574 7 430639 72 95 l 430641 73 431718 1150 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1000 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig543_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1000 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig543_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1192 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig544_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1192 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig544_2.2 (reverse complement)" } a { s 5418 b 1055096 134 e 1056154 1191 l 1055096 134 1055216 254 74 l 1055218 255 1056154 1191 76 } a { s 828 b 2785919 147 e 2786100 327 l 2785919 147 2786025 253 76 l 2786027 254 2786100 327 73 } a { s 11130 b 3406301 3 e 3407491 1192 l 3406301 3 3406315 17 80 l 3406318 18 3406391 91 85 l 3406392 93 3406411 112 95 l 3406412 114 3406552 254 98 l 3406554 255 3407491 1192 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1151 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig545_2.2" } a { s 9026 b 3993107 2 e 3994185 1092 l 3993107 2 3993953 848 99 l 3993954 850 3993976 872 100 l 3993977 874 3994001 898 76 l 3994002 900 3994016 914 93 l 3994017 916 3994088 987 78 l 3994089 990 3994109 1010 67 l 3994110 1012 3994144 1046 77 l 3994145 1049 3994169 1073 64 l 3994170 1077 3994185 1092 75 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1151 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig545_2.2 (reverse complement)" } a { s 260 b 2239298 453 e 2239345 500 l 2239298 453 2239345 500 77 } a { s 260 b 4096328 454 e 4096387 513 l 4096328 454 4096387 513 72 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1009 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig546_2.2" } a { s 9930 b 539128 1 e 540136 1009 l 539128 1 540136 1009 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1009 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig546_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1004 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig550_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1004 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig550_2.2 (reverse complement)" } a { s 9658 b 2793995 1 e 2794999 1004 l 2793995 1 2794082 88 95 l 2794084 89 2794999 1004 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1160 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig560_2.2" } a { s 11440 b 824749 1 e 825908 1160 l 824749 1 825908 1160 99 } a { s 230 b 3110026 966 e 3110074 1014 l 3110026 966 3110074 1014 73 } a { s 240 b 3522751 608 e 3522812 669 l 3522751 608 3522812 669 69 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1160 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig560_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1313 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig562_2.2" } a { s 12798 b 2148337 1 e 2149649 1312 l 2148337 1 2149559 1223 99 l 2149561 1224 2149649 1312 96 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1313 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig562_2.2 (reverse complement)" } a { s 290 b 2149530 88 e 2149562 120 l 2149530 88 2149562 120 94 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1020 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig586_2.2" } a { s 9970 b 1676501 1 e 1677517 1017 l 1676501 1 1677517 1017 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1020 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig586_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1027 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig590_2.2" } a { s 9838 b 1532442 1 e 1533468 1026 l 1532442 1 1533420 979 98 l 1533422 980 1533468 1026 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1027 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig590_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1183 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig599_2.2" } a { s 11278 b 3752734 1 e 3753922 1183 l 3752734 1 3753567 834 99 l 3753573 835 3753857 1119 98 l 3753859 1120 3753922 1183 91 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1183 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig599_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1187 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig608_2.2" } a { s 2690 b 977857 420 e 978245 808 l 977857 420 978245 808 85 } a { s 8798 b 1115326 1 e 1116501 1187 l 1115326 1 1115453 128 79 l 1115454 130 1115469 145 69 l 1115470 147 1115477 154 100 l 1115478 156 1115503 181 73 l 1115504 183 1115517 196 100 l 1115518 198 1115524 204 71 l 1115525 206 1115536 217 83 l 1115537 220 1115579 262 56 l 1115580 266 1116501 1187 93 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1187 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig608_2.2 (reverse complement)" } a { s 342 b 1964678 38 e 1964986 337 l 1964678 38 1964774 134 66 l 1964782 135 1964795 148 64 l 1964808 149 1964831 172 42 l 1964832 181 1964846 195 93 l 1964847 218 1964877 248 55 l 1964898 249 1964986 337 67 } a { s 2308 b 2759181 594 e 2759763 1187 l 2759181 594 2759509 922 74 l 2759510 926 2759552 968 56 l 2759553 971 2759569 987 65 l 2759570 990 2759585 1005 88 l 2759586 1007 2759611 1032 73 l 2759612 1034 2759619 1041 100 l 2759620 1043 2759635 1058 69 l 2759636 1060 2759763 1187 78 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1086 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig610_2.2" } a { s 8958 b 1336234 172 e 1337147 1086 l 1336234 172 1336579 517 99 l 1336580 519 1337147 1086 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1086 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig610_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1260 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig621_2.2" } a { s 280 b 654939 497 e 654976 534 l 654939 497 654976 534 87 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1260 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig621_2.2 (reverse complement)" } a { s 12240 b 654213 1 e 655472 1260 l 654213 1 655472 1260 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1200 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig624_2.2" } a { s 230 b 272205 229 e 272241 265 l 272205 229 272241 265 81 } a { s 250 b 4093270 202 e 4093368 300 l 4093270 202 4093368 300 63 } a { s 250 b 4723662 605 e 4723702 645 l 4723662 605 4723702 645 80 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1200 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig624_2.2 (reverse complement)" } a { s 9300 b 2352318 26 e 2353489 1200 l 2352318 26 2352416 124 78 l 2352417 126 2352564 273 79 l 2352566 274 2352637 345 78 l 2352638 347 2352659 368 73 l 2352660 371 2353489 1200 96 } a { s 9300 b 4017246 26 e 4018417 1200 l 4017246 26 4017344 124 78 l 4017345 126 4017492 273 79 l 4017494 274 4017565 345 78 l 4017566 347 4017587 368 73 l 4017588 371 4018417 1200 96 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1099 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig626_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1099 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig626_2.2 (reverse complement)" } a { s 7254 b 472445 7 e 473499 1064 l 472445 7 472536 98 82 l 472542 99 472568 125 48 l 472569 131 472776 338 72 l 472777 342 473499 1064 91 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1099 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig627_2.2" } a { s 10850 b 3201571 1 e 3202669 1099 l 3201571 1 3202669 1099 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1099 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig627_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1127 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig630_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1127 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig630_2.2 (reverse complement)" } a { s 8942 b 2029376 6 e 2030487 1115 l 2029376 6 2030177 807 98 l 2030178 809 2030315 946 76 l 2030317 947 2030399 1029 75 l 2030402 1030 2030487 1115 66 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1066 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig632_2.2" } a { s 10330 b 1884542 1 e 1885606 1065 l 1884542 1 1885606 1065 98 } a { s 250 b 3870115 992 e 3870151 1028 l 3870115 992 3870151 1028 84 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1066 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig632_2.2 (reverse complement)" } a { s 2960 b 1614140 16 e 1614913 789 l 1614140 16 1614913 789 69 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1058 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig634_2.2" } a { s 10440 b 216980 1 e 218037 1058 l 216980 1 218037 1058 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1058 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig634_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1071 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig646_2.2" } a { s 842 b 207761 401 e 208257 897 l 207761 401 207886 526 63 l 207887 532 207906 551 55 l 207909 552 207956 599 67 l 207974 600 207994 620 48 l 207995 638 208160 803 68 l 208164 804 208257 897 57 } a { s 10040 b 4851813 4 e 4852880 1071 l 4851813 4 4852880 1071 97 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1071 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig646_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1345 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig649_2.2" } a { s 13178 b 2466731 1 e 2468074 1345 l 2466731 1 2466804 74 100 l 2466805 76 2468074 1345 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1345 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig649_2.2 (reverse complement)" } a { s 688 b 3063186 931 e 3063558 1304 l 3063186 931 3063527 1272 59 l 3063528 1274 3063558 1304 68 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1069 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig652_2.2" } a { s 2250 b 1966005 25 e 1966285 305 l 1966005 25 1966285 305 90 } a { s 1060 b 2337306 794 e 2337511 999 l 2337306 794 2337511 999 76 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1069 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig652_2.2 (reverse complement)" } a { s 6180 b 976801 37 e 977829 1069 l 976801 37 976830 66 70 l 976831 68 976951 188 62 l 976952 195 977145 388 58 l 977149 389 977829 1069 91 } a { s 520 b 1112828 12 e 1112885 69 l 1112828 12 1112885 69 95 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1228 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig662_2.2" } a { s 11394 b 4567469 1 e 4568692 1227 l 4567469 1 4567556 88 92 l 4567557 90 4567766 299 92 l 4567767 301 4567819 353 98 l 4567820 355 4568692 1227 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1228 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig662_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1006 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig664_2.2" } a { s 10000 b 3593610 1 e 3594615 1006 l 3593610 1 3594615 1006 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1006 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig664_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1100 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig665_2.2" } a { s 10410 b 3091282 4 e 3092378 1100 l 3091282 4 3092378 1100 97 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1100 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig665_2.2 (reverse complement)" } a { s 230 b 4476470 377 e 4476502 409 l 4476470 377 4476502 409 85 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1210 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig668_2.2" } a { s 11386 b 3926163 1 e 3927372 1210 l 3926163 1 3926226 64 98 l 3926227 66 3926636 475 96 l 3926638 476 3927372 1210 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1210 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig668_2.2 (reverse complement)" } a { s 240 b 1023810 250 e 1023849 289 l 1023810 250 1023849 289 80 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1091 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig670_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1091 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig670_2.2 (reverse complement)" } a { s 10208 b 3673306 1 e 3674397 1091 l 3673306 1 3674296 991 98 l 3674298 992 3674397 1091 87 } a { s 512 b 3699000 687 e 3699401 1090 l 3699000 687 3699118 805 61 l 3699119 807 3699158 846 50 l 3699159 854 3699165 860 71 l 3699171 861 3699301 991 60 l 3699303 992 3699401 1090 62 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1153 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig678_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1153 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig678_2.2 (reverse complement)" } a { s 11194 b 261065 4 e 262215 1151 l 261065 4 261104 43 98 l 261106 44 261114 52 100 l 261116 53 261125 62 100 l 261127 63 262215 1151 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1090 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig679_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1090 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig679_2.2 (reverse complement)" } a { s 10660 b 263398 1 e 264487 1090 l 263398 1 264487 1090 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1211 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig685_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1211 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig685_2.2 (reverse complement)" } a { s 12010 b 1323452 1 e 1324662 1211 l 1323452 1 1324662 1211 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1108 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig691_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1108 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig691_2.2 (reverse complement)" } a { s 8538 b 2528925 122 e 2529910 1108 l 2528925 122 2528949 146 88 l 2528950 148 2529910 1108 94 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1117 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig695_2.2" } a { s 6546 b 3237725 4 e 3238755 1036 l 3237725 4 3238273 552 79 l 3238274 554 3238600 880 92 l 3238601 882 3238755 1036 74 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1117 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig695_2.2 (reverse complement)" } a { s 5848 b 2583503 460 e 2584159 1117 l 2583503 460 2583607 564 80 l 2583608 566 2584159 1117 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1058 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig703_2.2" } a { s 7244 b 2988508 1 e 2989266 762 l 2988508 1 2989243 736 99 l 2989244 738 2989248 742 100 l 2989249 744 2989256 751 100 l 2989257 753 2989266 762 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1058 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig703_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1088 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig704_2.2" } a { s 9542 b 1530779 1 e 1531864 1088 l 1530779 1 1531062 284 96 l 1531063 286 1531077 300 87 l 1531078 302 1531086 310 100 l 1531088 311 1531108 331 71 l 1531109 333 1531864 1088 96 } a { s 1196 b 1531617 934 e 1531771 1088 l 1531617 934 1531704 1021 90 l 1531705 1023 1531713 1031 100 l 1531715 1032 1531771 1088 96 } a { s 440 b 1531621 1031 e 1531678 1088 l 1531621 1031 1531678 1088 88 } a { s 1940 b 1531710 841 e 1531957 1088 l 1531710 841 1531957 1088 89 } a { s 1940 b 1531803 841 e 1532050 1088 l 1531803 841 1532050 1088 89 } a { s 1650 b 1531896 841 e 1532122 1067 l 1531896 841 1532122 1067 86 } a { s 1040 b 1531989 841 e 1532122 974 l 1531989 841 1532122 974 89 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1088 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig704_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1067 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig714_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1067 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig714_2.2 (reverse complement)" } a { s 4658 b 4562518 255 e 4563279 1067 l 4562518 255 4562539 276 73 l 4562540 279 4562558 297 68 l 4562559 301 4562570 312 83 l 4562571 315 4562582 326 100 l 4562583 328 4562589 334 100 l 4562590 338 4562606 354 65 l 4562607 357 4562616 366 90 l 4562617 371 4562634 388 78 l 4562635 396 4562678 439 57 l 4562679 464 4562976 761 91 l 4562977 763 4563063 849 90 l 4563064 851 4563126 913 94 l 4563127 915 4563279 1067 86 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1085 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig718_2.2" } a { s 776 b 416561 5 e 417047 464 l 416561 5 416767 211 62 l 416775 212 416788 225 50 l 416789 230 416876 317 63 l 416877 329 416885 337 67 l 416921 338 417047 464 65 } a { s 920 b 2704536 2 e 2704955 421 l 2704536 2 2704955 421 61 } a { s 10540 b 2983862 4 e 2984943 1085 l 2983862 4 2984943 1085 99 } a { s 796 b 4213416 36 e 4213797 419 l 4213416 36 4213781 401 61 l 4213782 404 4213797 419 75 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1085 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig718_2.2 (reverse complement)" } a { s 710 b 715619 701 e 715962 1041 l 715619 701 715776 858 61 l 715777 870 715787 880 73 l 715802 881 715962 1041 65 } a { s 790 b 1782679 689 e 1782985 995 l 1782679 689 1782985 995 63 } a { s 1098 b 3004860 635 e 3005276 1051 l 3004860 635 3004972 747 66 l 3004973 756 3004990 773 56 l 3004999 774 3005276 1051 65 } a { s 1060 b 4390258 616 e 4390723 1081 l 4390258 616 4390723 1081 61 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1211 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig726_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1211 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig726_2.2 (reverse complement)" } a { s 11990 b 2694323 1 e 2695533 1211 l 2694323 1 2695533 1211 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1115 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig735_2.2" } a { s 240 b 1112396 15 e 1112427 46 l 1112396 15 1112427 46 88 } a { s 300 b 4141347 18 e 4141378 49 l 4141347 18 4141378 49 97 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1115 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig735_2.2 (reverse complement)" } a { s 250 b 737968 1067 e 738002 1101 l 737968 1067 738002 1101 86 } a { s 10910 b 3920919 1 e 3922033 1115 l 3920919 1 3922033 1115 99 } a { s 310 b 3998008 1065 e 3998044 1101 l 3998008 1065 3998044 1101 92 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1146 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig740_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1146 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig740_2.2 (reverse complement)" } a { s 11280 b 3917447 1 e 3918592 1146 l 3917447 1 3918592 1146 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1203 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig742_2.2" } a { s 300 b 2468463 476 e 2468522 535 l 2468463 476 2468522 535 75 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1203 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig742_2.2 (reverse complement)" } a { s 868 b 624283 670 e 624726 1119 l 624283 670 624603 990 60 l 624604 997 624726 1119 63 } a { s 11718 b 1670074 1 e 1671275 1203 l 1670074 1 1670339 266 98 l 1670340 268 1671275 1203 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1074 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig749_2.2" } a { s 10600 b 4585625 1 e 4586692 1068 l 4585625 1 4586692 1068 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1074 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig749_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1225 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig752_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1225 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig752_2.2 (reverse complement)" } a { s 11936 b 4204054 1 e 4205278 1225 l 4204054 1 4204084 31 90 l 4204086 32 4204157 103 99 l 4204158 105 4205278 1225 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1033 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig756_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1033 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig756_2.2 (reverse complement)" } a { s 9924 b 2558069 1 e 2559100 1033 l 2558069 1 2559036 968 99 l 2559037 970 2559042 975 100 l 2559043 977 2559088 1022 100 l 2559090 1023 2559100 1033 100 } a { s 230 b 4243429 544 e 4243457 572 l 4243429 544 4243457 572 90 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1046 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig761_2.2" } a { s 6350 b 3539131 1 e 3539779 649 l 3539131 1 3539779 649 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1046 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig761_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1008 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig764_2.2" } a { s 9548 b 108794 1 e 109800 1008 l 108794 1 109677 884 98 l 109678 886 109800 1008 94 } a { s 358 b 2443898 444 e 2443970 515 l 2443898 444 2443912 458 87 l 2443914 459 2443970 515 77 } a { s 296 b 3508035 450 e 3508105 517 l 3508035 450 3508067 482 79 l 3508078 483 3508080 485 100 l 3508081 493 3508105 517 96 } a { s 310 b 3763091 450 e 3763161 515 l 3763091 450 3763123 482 91 l 3763129 483 3763161 515 67 } a { s 288 b 3867861 450 e 3867952 515 l 3867861 450 3867893 482 85 l 3867920 483 3867952 515 76 } a { s 272 b 4081837 469 e 4081884 520 l 4081837 469 4081850 482 93 l 4081851 487 4081884 520 82 } a { s 240 b 4257054 135 e 4257099 180 l 4257054 135 4257099 180 76 } a { s 240 b 4613539 492 e 4613564 517 l 4613539 492 4613564 517 96 } a { s 238 b 4786234 450 e 4786292 514 l 4786234 450 4786266 482 85 l 4786267 489 4786292 514 65 } a { s 244 b 4787495 451 e 4787564 527 l 4787495 451 4787502 458 100 l 4787504 459 4787531 486 89 l 4787532 497 4787549 514 67 l 4787552 515 4787564 527 85 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1008 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig764_2.2 (reverse complement)" } a { s 240 b 5075 527 e 5118 570 l 5075 527 5118 570 77 } a { s 260 b 220803 529 e 220856 582 l 220803 529 220856 582 74 } a { s 318 b 732689 494 e 732761 560 l 732689 494 732714 519 77 l 732718 520 732745 547 89 l 732749 548 732761 560 85 } a { s 248 b 1450265 527 e 1450300 561 l 1450265 527 1450288 550 96 l 1450290 551 1450300 561 91 } a { s 240 b 3218361 515 e 3218408 562 l 3218361 515 3218408 562 75 } a { s 362 b 3751750 492 e 3751828 561 l 3751750 492 3751778 520 97 l 3751788 521 3751828 561 71 } a { s 290 b 4780673 494 e 4780737 558 l 4780673 494 4780737 558 72 } a { s 334 b 4822228 494 e 4822298 561 l 4822228 494 4822251 517 88 l 4822254 518 4822286 550 79 l 4822288 551 4822298 561 91 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1288 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig766_2.2" } a { s 1550 b 1103362 629 e 1103716 983 l 1103362 629 1103716 983 72 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1288 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig766_2.2 (reverse complement)" } a { s 2860 b 1966273 981 e 1966580 1288 l 1966273 981 1966580 1288 96 } a { s 1550 b 2771422 306 e 2771776 660 l 2771422 306 2771776 660 72 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1142 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig771_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1142 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig771_2.2 (reverse complement)" } a { s 11300 b 674388 1 e 675529 1142 l 674388 1 675529 1142 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1246 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig781_2.2" } a { s 12116 b 2493768 1 e 2495015 1246 l 2493768 1 2494336 569 99 l 2494338 570 2494344 576 100 l 2494346 577 2495015 1246 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1246 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig781_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1008 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig783_2.2" } a { s 9800 b 2549608 1 e 2550615 1008 l 2549608 1 2550615 1008 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1008 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig783_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1143 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig786_2.2" } a { s 10682 b 53528 4 e 54665 1143 l 53528 4 53571 47 98 l 53573 48 53625 100 94 l 53626 102 53685 161 97 l 53686 163 53757 234 94 l 53758 236 54665 1143 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1143 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig786_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1024 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig789_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1024 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig789_2.2 (reverse complement)" } a { s 10110 b 1284664 1 e 1285684 1021 l 1284664 1 1285684 1021 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1200 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig793_2.2" } a { s 11098 b 4403252 1 e 4404446 1194 l 4403252 1 4404423 1172 97 l 4404425 1173 4404446 1194 91 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1200 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig793_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1263 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig795_2.2" } a { s 12070 b 552547 1 e 553809 1263 l 552547 1 553809 1263 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1263 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig795_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1102 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig798_2.2" } a { s 4708 b 3258403 546 e 3258951 1095 l 3258403 546 3258922 1065 94 l 3258923 1067 3258951 1095 79 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1102 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig798_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1083 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig813_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1083 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig813_2.2 (reverse complement)" } a { s 230 b 2306127 839 e 2306157 869 l 2306127 839 2306157 869 87 } a { s 10590 b 3295669 1 e 3296751 1083 l 3295669 1 3296751 1083 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1077 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig825_2.2" } a { s 10112 b 3054789 1 e 3055863 1077 l 3054789 1 3054952 164 99 l 3054953 166 3055798 1011 98 l 3055799 1013 3055804 1018 83 l 3055805 1020 3055852 1067 94 l 3055854 1068 3055863 1077 100 } a { s 280 b 3533694 205 e 3533753 264 l 3533694 205 3533753 264 73 } a { s 250 b 3634161 285 e 3634193 317 l 3634161 285 3634193 317 88 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1077 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig825_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1395 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig829_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1395 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig829_2.2 (reverse complement)" } a { s 13448 b 3875066 36 e 3876424 1395 l 3875066 36 3875073 43 100 l 3875074 45 3876424 1395 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1225 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig831_2.2" } a { s 290 b 223492 761 e 223550 819 l 223492 761 223550 819 75 } a { s 320 b 486183 783 e 486224 824 l 486183 783 486224 824 88 } a { s 230 b 511629 785 e 511663 819 l 511629 785 511663 819 83 } a { s 280 b 555338 772 e 555385 819 l 555338 772 555385 819 79 } a { s 260 b 732723 782 e 732760 819 l 732723 782 732760 819 84 } a { s 320 b 805794 783 e 805829 818 l 805794 783 805829 818 94 } a { s 270 b 858221 787 e 858253 819 l 858221 787 858253 819 91 } a { s 280 b 1084724 786 e 1084757 819 l 1084724 786 1084757 819 91 } a { s 280 b 2383736 783 e 2383777 824 l 2383736 783 2383777 824 83 } a { s 240 b 2517928 783 e 2517963 818 l 2517928 783 2517963 818 83 } a { s 230 b 2722022 783 e 2722058 819 l 2722022 783 2722058 819 81 } a { s 310 b 2951638 783 e 2951674 819 l 2951638 783 2951674 819 92 } a { s 240 b 2990053 786 e 2990086 819 l 2990053 786 2990086 819 85 } a { s 280 b 3488848 784 e 3488883 819 l 3488848 784 3488883 819 89 } a { s 260 b 3654437 786 e 3654470 819 l 3654437 786 3654470 819 88 } a { s 250 b 3670076 786 e 3670108 818 l 3670076 786 3670108 818 88 } a { s 290 b 3972418 786 e 3972452 820 l 3972418 786 3972452 820 91 } a { s 242 b 4328757 785 e 4328821 845 l 4328757 785 4328796 824 80 l 4328801 825 4328821 845 67 } a { s 230 b 4438390 785 e 4438424 819 l 4438390 785 4438424 819 83 } a { s 270 b 4446034 785 e 4446068 819 l 4446034 785 4446068 819 89 } a { s 270 b 4449279 783 e 4449315 819 l 4449279 783 4449315 819 86 } a { s 310 b 4469173 783 e 4469207 817 l 4469173 783 4469207 817 94 } a { s 250 b 4509329 781 e 4509367 819 l 4509329 781 4509367 819 82 } a { s 320 b 4521617 786 e 4521650 819 l 4521617 786 4521650 819 97 } a { s 300 b 4524374 782 e 4524411 819 l 4524374 782 4524411 819 89 } a { s 270 b 4686420 783 e 4686456 819 l 4686420 783 4686456 819 86 } a { s 240 b 4724592 786 e 4724625 819 l 4724592 786 4724625 819 85 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1225 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig831_2.2 (reverse complement)" } a { s 260 b 57260 407 e 57293 440 l 57260 407 57293 440 88 } a { s 260 b 81635 407 e 81668 440 l 81635 407 81668 440 88 } a { s 310 b 92104 405 e 92142 443 l 92104 405 92142 443 90 } a { s 260 b 117990 407 e 118031 448 l 117990 407 118031 448 81 } a { s 300 b 240522 407 e 240561 446 l 240522 407 240561 446 88 } a { s 260 b 252832 405 e 252867 440 l 252832 405 252867 440 86 } a { s 300 b 473502 407 e 473537 442 l 473502 407 473537 442 92 } a { s 300 b 546765 407 e 546798 440 l 546765 407 546798 440 94 } a { s 230 b 563934 407 e 563968 441 l 563934 407 563968 441 83 } a { s 340 b 880773 405 e 880808 440 l 880773 405 880808 440 97 } a { s 330 b 2451374 405 e 2451412 443 l 2451374 405 2451412 443 92 } a { s 290 b 2476588 407 e 2476624 443 l 2476588 407 2476624 443 89 } a { s 250 b 2571329 407 e 2571365 443 l 2571329 407 2571365 443 84 } a { s 300 b 2708110 407 e 2708143 440 l 2708110 407 2708143 440 94 } a { s 230 b 2942898 410 e 2942940 452 l 2942898 410 2942940 452 77 } a { s 300 b 3109281 408 e 3109316 443 l 3109281 408 3109316 443 92 } a { s 330 b 3124419 407 e 3124459 447 l 3124419 407 3124459 447 90 } a { s 340 b 3218420 406 e 3218457 443 l 3218420 406 3218457 443 95 } a { s 12030 b 3226090 1 e 3227314 1225 l 3226090 1 3227314 1225 99 } a { s 330 b 3239430 407 e 3239466 443 l 3239430 407 3239466 443 95 } a { s 250 b 3328398 407 e 3328434 443 l 3328398 407 3328434 443 84 } a { s 330 b 3539786 407 e 3539822 443 l 3539786 407 3539822 443 95 } a { s 270 b 4253411 407 e 4253443 439 l 4253411 407 4253443 439 91 } a { s 270 b 4256000 407 e 4256036 443 l 4256000 407 4256036 443 86 } a { s 260 b 4412130 407 e 4412161 438 l 4412130 407 4412161 438 91 } a { s 280 b 4716912 407 e 4716945 440 l 4716912 407 4716945 440 91 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1271 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig832_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1271 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig832_2.2 (reverse complement)" } a { s 12150 b 1040046 1 e 1041308 1263 l 1040046 1 1041308 1263 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1502 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig837_2.2" } a { s 230 b 479508 1163 e 479538 1193 l 479508 1163 479538 1193 87 } a { s 390 b 3827024 935 e 3827298 1209 l 3827024 935 3827298 1209 57 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1502 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig837_2.2 (reverse complement)" } a { s 13752 b 24930 46 e 26395 1502 l 24930 46 24939 55 100 l 24941 56 24946 61 100 l 24948 62 24970 84 100 l 24972 85 24977 90 100 l 24979 91 24992 104 79 l 24994 105 25003 114 90 l 25006 115 25030 139 80 l 25032 140 25043 151 100 l 25045 152 26395 1502 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1413 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig838_2.2" } a { s 260 b 81685 770 e 81716 801 l 81685 770 81716 801 91 } a { s 340 b 85416 760 e 85457 801 l 85416 760 85457 801 90 } a { s 522 b 351433 545 e 351609 721 l 351433 545 351513 625 62 l 351514 628 351535 649 73 l 351537 650 351550 663 86 l 351552 664 351609 721 78 } a { s 398 b 460668 647 e 460742 720 l 460668 647 460684 663 88 l 460686 664 460742 720 79 } a { s 522 b 906743 545 e 906919 721 l 906743 545 906823 625 62 l 906824 628 906845 649 73 l 906847 650 906860 663 86 l 906862 664 906919 721 78 } a { s 482 b 1184914 575 e 1185060 721 l 1184914 575 1184964 625 65 l 1184965 628 1184986 649 73 l 1184988 650 1185001 663 86 l 1185003 664 1185060 721 78 } a { s 13768 b 2426838 1 e 2428251 1413 l 2426838 1 2428206 1369 99 l 2428208 1370 2428251 1413 98 } a { s 240 b 3124469 770 e 3124500 801 l 3124469 770 3124500 801 88 } a { s 280 b 3239480 770 e 3239511 801 l 3239480 770 3239511 801 94 } a { s 328 b 3611797 648 e 3611870 720 l 3611797 648 3611809 660 100 l 3611811 661 3611870 720 72 } a { s 502 b 3960558 545 e 3960734 721 l 3960558 545 3960638 625 60 l 3960639 628 3960660 649 73 l 3960662 650 3960675 663 86 l 3960677 664 3960734 721 78 } a { s 240 b 4007496 771 e 4007525 800 l 4007496 771 4007525 800 90 } a { s 240 b 4121784 771 e 4121817 804 l 4121784 771 4121817 804 85 } a { s 300 b 4255953 771 e 4255988 806 l 4255953 771 4255988 806 92 } a { s 290 b 4341355 769 e 4341389 803 l 4341355 769 4341389 803 91 } a { s 270 b 4720361 771 e 4720391 801 l 4720361 771 4720391 801 94 } a { s 398 b 4753760 648 e 4753834 721 l 4753760 648 4753775 663 88 l 4753777 664 4753834 721 79 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1413 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig838_2.2 (reverse complement)" } a { s 260 b 117947 612 e 117978 643 l 117947 612 117978 643 91 } a { s 250 b 836280 613 e 836310 643 l 836280 613 836310 643 90 } a { s 368 b 1399576 694 e 1399649 766 l 1399576 694 1399632 750 77 l 1399634 751 1399649 766 88 } a { s 310 b 2185464 694 e 2185520 750 l 2185464 694 2185520 750 77 } a { s 522 b 2287724 693 e 2287900 869 l 2287724 693 2287781 750 78 l 2287783 751 2287796 764 86 l 2287798 765 2287819 786 73 l 2287820 789 2287900 869 62 } a { s 472 b 2589188 694 e 2589333 839 l 2589188 694 2589244 750 77 l 2589246 751 2589259 764 86 l 2589261 765 2589282 786 73 l 2589283 789 2589333 839 65 } a { s 240 b 2676076 613 e 2676109 646 l 2676076 613 2676109 646 85 } a { s 522 b 3316856 693 e 3317032 869 l 3316856 693 3316913 750 78 l 3316915 751 3316928 764 86 l 3316930 765 3316951 786 73 l 3316952 789 3317032 869 62 } a { s 270 b 3386091 613 e 3386119 641 l 3386091 613 3386119 641 97 } a { s 318 b 3715220 613 e 3715345 765 l 3715220 613 3715237 630 78 l 3715239 631 3715260 652 73 l 3715261 682 3715333 754 67 l 3715335 755 3715345 765 100 } a { s 270 b 3814364 614 e 3814394 644 l 3814364 614 3814394 644 94 } a { s 338 b 4042393 695 e 4042465 766 l 4042393 695 4042448 750 75 l 4042450 751 4042465 766 88 } a { s 280 b 4063490 612 e 4063523 645 l 4063490 612 4063523 645 91 } a { s 280 b 4338197 614 e 4338228 645 l 4338197 614 4338228 645 94 } a { s 290 b 4524329 610 e 4524363 644 l 4524329 610 4524363 644 91 } a { s 230 b 4708295 613 e 4708325 643 l 4708295 613 4708325 643 87 } a { s 320 b 4822220 613 e 4822257 650 l 4822220 613 4822257 650 92 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1014 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig842_2.2" } a { s 732 b 915077 45 e 915696 664 l 915077 45 915340 308 59 l 915341 324 915352 335 75 l 915368 336 915611 579 55 l 915612 587 915623 598 75 l 915631 599 915696 664 67 } a { s 6826 b 4379194 1 e 4380198 1007 l 4379194 1 4380061 868 83 l 4380062 870 4380098 906 97 l 4380099 908 4380198 1007 91 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1014 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig842_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1138 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig843_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1138 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig843_2.2 (reverse complement)" } a { s 10976 b 1945982 1 e 1947116 1135 l 1945982 1 1946058 77 100 l 1946059 79 1947097 1117 99 l 1947099 1118 1947116 1135 94 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1232 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig844_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1232 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig844_2.2 (reverse complement)" } a { s 12038 b 2023 1 e 3255 1232 l 2023 1 2071 49 92 l 2073 50 3255 1232 99 } a { s 580 b 4312668 124 e 4312943 399 l 4312668 124 4312943 399 61 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1171 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig846_2.2" } a { s 11126 b 2937605 2 e 2938774 1171 l 2937605 2 2937821 218 99 l 2937822 220 2938217 615 98 l 2938219 616 2938774 1171 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1171 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig846_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1063 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig848_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1063 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig848_2.2 (reverse complement)" } a { s 10510 b 2926604 1 e 2927666 1063 l 2926604 1 2927666 1063 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1137 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig849_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1137 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig849_2.2 (reverse complement)" } a { s 11058 b 750108 1 e 751243 1137 l 750108 1 750197 90 97 l 750198 92 751243 1137 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1293 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig855_2.2" } a { s 4330 b 481253 1 e 481727 475 l 481253 1 481727 475 96 } a { s 8760 b 726833 342 e 727784 1293 l 726833 342 727784 1293 96 } a { s 664 b 894933 313 e 895386 766 l 894933 313 895107 487 66 l 895108 502 895155 549 52 l 895170 550 895386 766 56 } a { s 250 b 1031884 395 e 1031926 437 l 1031884 395 1031926 437 79 } a { s 634 b 1312495 203 e 1312728 439 l 1312495 203 1312576 284 66 l 1312577 288 1312728 439 64 } a { s 270 b 2101527 357 e 2101587 417 l 2101527 357 2101587 417 72 } a { s 344 b 2258302 228 e 2258510 439 l 2258302 228 2258367 293 62 l 2258368 297 2258510 439 59 } a { s 580 b 2553212 329 e 2553331 448 l 2553212 329 2553331 448 74 } a { s 358 b 3723961 230 e 3724459 746 l 3723961 230 3724013 282 64 l 3724014 286 3724166 438 59 l 3724167 440 3724181 454 60 l 3724182 463 3724202 483 67 l 3724203 499 3724229 525 56 l 3724230 532 3724241 543 67 l 3724269 544 3724339 614 61 l 3724340 634 3724347 641 75 l 3724355 642 3724459 746 61 } a { s 250 b 3728877 357 e 3728953 433 l 3728877 357 3728953 433 66 } a { s 370 b 3738253 357 e 3738347 451 l 3738253 357 3738347 451 69 } a { s 260 b 3810764 340 e 3810857 433 l 3810764 340 3810857 433 64 } a { s 270 b 4474087 711 e 4474115 739 l 4474087 711 4474115 739 97 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1293 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig855_2.2 (reverse complement)" } a { s 430 b 566868 849 e 566956 937 l 566868 849 566956 937 74 } a { s 300 b 835901 855 e 835998 952 l 835901 855 835998 952 65 } a { s 406 b 950029 855 e 950330 1159 l 950029 855 950126 952 70 l 950139 953 950165 979 59 l 950166 995 950330 1159 54 } a { s 346 b 1071874 857 e 1071969 952 l 1071874 857 1071915 898 81 l 1071916 900 1071934 918 63 l 1071936 919 1071969 952 74 } a { s 310 b 2321420 848 e 2321524 952 l 2321420 848 2321524 952 65 } a { s 240 b 3007703 856 e 3007784 937 l 3007703 856 3007784 937 65 } a { s 722 b 4451107 682 e 4451584 1165 l 4451107 682 4451170 745 70 l 4451183 746 4451198 761 69 l 4451199 769 4451211 781 62 l 4451212 793 4451239 820 61 l 4451248 821 4451261 834 64 l 4451268 835 4451278 845 64 l 4451279 857 4451419 997 65 l 4451420 1001 4451493 1074 73 l 4451494 1078 4451521 1105 50 l 4451525 1106 4451584 1165 63 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1358 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig856_2.2" } a { s 13380 b 4218412 1 e 4219769 1358 l 4218412 1 4219769 1358 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1358 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig856_2.2 (reverse complement)" } a { s 260 b 514852 332 e 514927 407 l 514852 332 514927 407 67 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1355 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig862_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1355 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig862_2.2 (reverse complement)" } a { s 12990 b 1205861 1 e 1207215 1355 l 1205861 1 1207215 1355 98 } a { s 970 b 1592074 344 e 1592232 502 l 1592074 344 1592232 502 81 } a { s 288 b 1825558 344 e 1825709 429 l 1825558 344 1825631 417 77 l 1825698 418 1825709 429 83 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1369 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig865_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1369 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig865_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1264 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig866_2.2" } a { s 260 b 223517 611 e 223550 644 l 223517 611 223550 644 88 } a { s 280 b 486186 611 e 486219 644 l 486186 611 486219 644 91 } a { s 280 b 511630 611 e 511669 650 l 511630 611 511669 650 85 } a { s 260 b 555352 611 e 555385 644 l 555352 611 555385 644 88 } a { s 344 b 732681 583 e 732760 644 l 732681 583 732708 610 86 l 732727 611 732760 644 85 } a { s 270 b 805797 611 e 805829 643 l 805797 611 805829 643 91 } a { s 352 b 836280 583 e 836355 644 l 836280 583 836307 610 82 l 836322 611 836355 644 88 } a { s 296 b 858180 583 e 858255 646 l 858180 583 858208 611 69 l 858221 612 858255 646 89 } a { s 260 b 886964 580 e 887051 647 l 886964 580 886994 610 68 l 887015 611 887051 647 84 } a { s 12172 b 1084102 1 e 1085375 1264 l 1084102 1 1084623 522 99 l 1084636 523 1085300 1187 99 l 1085301 1189 1085307 1195 100 l 1085308 1197 1085375 1264 99 } a { s 248 b 1815722 611 e 1815759 647 l 1815722 611 1815730 619 100 l 1815732 620 1815759 647 89 } a { s 270 b 2383739 611 e 2383771 643 l 2383739 611 2383771 643 91 } a { s 290 b 2517883 583 e 2517963 643 l 2517883 583 2517910 610 79 l 2517931 611 2517963 643 85 } a { s 250 b 2951641 611 e 2951677 647 l 2951641 611 2951677 647 84 } a { s 240 b 3488850 611 e 3488897 658 l 3488850 611 3488897 658 75 } a { s 230 b 3534285 583 e 3534319 617 l 3534285 583 3534319 617 83 } a { s 322 b 3654392 583 e 3654473 647 l 3654392 583 3654404 595 100 l 3654405 597 3654418 610 79 l 3654437 611 3654473 647 86 } a { s 250 b 3670076 611 e 3670108 643 l 3670076 611 3670108 643 88 } a { s 306 b 3972373 583 e 3972455 648 l 3972373 583 3972400 610 68 l 3972418 611 3972455 648 89 } a { s 240 b 4438391 611 e 4438424 644 l 4438391 611 4438424 644 85 } a { s 260 b 4446035 611 e 4446068 644 l 4446035 611 4446068 644 88 } a { s 414 b 4449237 579 e 4449317 646 l 4449237 579 4449268 610 84 l 4449282 611 4449317 646 89 } a { s 240 b 4469176 611 e 4469207 642 l 4469176 611 4469207 642 88 } a { s 276 b 4509300 584 e 4509367 644 l 4509300 584 4509326 610 67 l 4509334 611 4509367 644 88 } a { s 402 b 4521570 583 e 4521654 648 l 4521570 583 4521597 610 86 l 4521617 611 4521654 648 89 } a { s 304 b 4524332 583 e 4524411 644 l 4524332 583 4524359 610 79 l 4524378 611 4524411 644 85 } a { s 300 b 4686423 611 e 4686456 644 l 4686423 611 4686456 644 94 } a { s 364 b 4724552 584 e 4724625 644 l 4724552 584 4724578 610 85 l 4724592 611 4724625 644 88 } a { s 304 b 4780665 583 e 4780737 643 l 4780665 583 4780691 609 93 l 4780707 610 4780718 621 92 l 4780719 625 4780737 643 84 } a { s 250 b 4799591 582 e 4799682 644 l 4799591 582 4799618 609 93 l 4799651 610 4799666 625 81 l 4799667 629 4799682 644 81 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1264 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig866_2.2 (reverse complement)" } a { s 280 b 57256 617 e 57293 654 l 57256 617 57293 654 87 } a { s 350 b 81632 618 e 81716 682 l 81632 618 81668 654 86 l 81689 655 81716 682 82 } a { s 280 b 92106 621 e 92139 654 l 92106 621 92139 654 91 } a { s 278 b 117988 619 e 118062 682 l 117988 619 118023 654 83 l 118035 655 118062 682 71 } a { s 346 b 240518 617 e 240600 682 l 240518 617 240555 654 87 l 240573 655 240600 682 79 } a { s 326 b 473502 621 e 473590 682 l 473502 621 473535 654 91 l 473563 655 473590 682 79 } a { s 270 b 546764 620 e 546798 654 l 546764 620 546798 654 89 } a { s 276 b 563934 621 e 564006 682 l 563934 621 563967 654 85 l 563982 655 563993 666 75 l 563994 670 564006 682 100 } a { s 280 b 880775 621 e 880808 654 l 880775 621 880808 654 91 } a { s 230 b 1354854 656 e 1354880 682 l 1354854 656 1354880 682 93 } a { s 260 b 2451376 621 e 2451409 654 l 2451376 621 2451409 654 88 } a { s 290 b 2476585 618 e 2476621 654 l 2476585 618 2476621 654 89 } a { s 356 b 2497320 621 e 2497403 682 l 2497320 621 2497353 654 85 l 2497376 655 2497403 682 89 } a { s 300 b 2708110 621 e 2708143 654 l 2708110 621 2708143 654 94 } a { s 268 b 2942898 624 e 2942975 680 l 2942898 624 2942928 654 87 l 2942950 655 2942975 680 77 } a { s 290 b 3109281 622 e 3109313 654 l 3109281 622 3109313 654 94 } a { s 290 b 3124406 608 e 3124500 682 l 3124406 608 3124452 654 79 l 3124473 655 3124500 682 71 } a { s 230 b 3180636 1065 e 3180666 1095 l 3180636 1065 3180666 1095 87 } a { s 280 b 3218421 621 e 3218454 654 l 3218421 621 3218454 654 91 } a { s 280 b 3226496 621 e 3226529 654 l 3226496 621 3226529 654 91 } a { s 350 b 3239429 620 e 3239511 682 l 3239429 620 3239463 654 91 l 3239484 655 3239511 682 79 } a { s 330 b 3328395 618 e 3328479 682 l 3328395 618 3328431 654 86 l 3328452 655 3328479 682 79 } a { s 290 b 3539779 614 e 3539819 654 l 3539779 614 3539819 654 85 } a { s 330 b 4253397 607 e 4253443 653 l 4253397 607 4253443 653 85 } a { s 260 b 4412130 621 e 4412161 652 l 4412130 621 4412161 652 91 } a { s 304 b 4716912 621 e 4717005 681 l 4716912 621 4716945 654 85 l 4716979 655 4717005 681 85 } a { s 286 b 4835688 621 e 4835776 682 l 4835688 621 4835706 639 79 l 4835708 640 4835723 655 88 l 4835750 656 4835776 682 93 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1127 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig867_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1127 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig867_2.2 (reverse complement)" } a { s 10888 b 815815 1 e 816942 1127 l 815815 1 816875 1061 99 l 816877 1062 816942 1127 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1333 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig871_2.2" } a { s 13030 b 2525592 1 e 2526924 1333 l 2525592 1 2526924 1333 99 } a { s 610 b 2618682 1058 e 2618896 1272 l 2618682 1058 2618896 1272 64 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1333 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig871_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1284 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig874_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1284 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig874_2.2 (reverse complement)" } a { s 728 b 1648910 877 e 1649175 1139 l 1648910 877 1648928 895 68 l 1648932 896 1649056 1020 70 l 1649057 1035 1649076 1054 70 l 1649091 1055 1649175 1139 69 } a { s 240 b 2558611 1091 e 2558640 1120 l 2558611 1091 2558640 1120 90 } a { s 11468 b 4242340 3 e 4243620 1284 l 4242340 3 4243496 1159 95 l 4243497 1161 4243620 1284 96 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1040 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig876_2.2" } a { s 390 b 1885369 54 e 1885633 318 l 1885369 54 1885633 318 57 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1040 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig876_2.2 (reverse complement)" } a { s 10340 b 3312244 1 e 3313283 1040 l 3312244 1 3313283 1040 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1292 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig877_2.2" } a { s 12800 b 2468113 1 e 2469404 1292 l 2468113 1 2469404 1292 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1292 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig877_2.2 (reverse complement)" } a { s 300 b 1670741 883 e 1670800 942 l 1670741 883 1670800 942 75 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1278 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig878_2.2" } a { s 304 b 4696591 398 e 4696669 479 l 4696591 398 4696600 407 90 l 4696601 411 4696669 479 71 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1278 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig878_2.2 (reverse complement)" } a { s 12046 b 3850403 1 e 3851680 1278 l 3850403 1 3850422 20 75 l 3850424 21 3850601 198 96 l 3850602 200 3851680 1278 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1215 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig880_2.2" } a { s 11950 b 4033109 1 e 4034323 1215 l 4033109 1 4034323 1215 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1215 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig880_2.2 (reverse complement)" } a { s 260 b 4034054 241 e 4034083 270 l 4034054 241 4034083 270 93 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1230 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig882_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1230 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig882_2.2 (reverse complement)" } a { s 11602 b 1953147 33 e 1954346 1230 l 1953147 33 1953369 255 100 l 1953370 257 1953377 264 100 l 1953379 265 1953875 761 99 l 1953878 762 1954346 1230 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1226 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig883_2.2" } a { s 11108 b 497292 1 e 498474 1184 l 497292 1 498358 1067 100 l 498359 1069 498474 1184 75 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1226 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig883_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1504 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig885_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1504 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig885_2.2 (reverse complement)" } a { s 14878 b 1058127 1 e 1059631 1504 l 1058127 1 1059554 1428 100 l 1059556 1429 1059631 1504 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1181 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig886_2.2" } a { s 380 b 95254 1042 e 95327 1115 l 95254 1042 95327 1115 76 } a { s 650 b 252878 997 e 252996 1115 l 252878 997 252996 1115 77 } a { s 520 b 503859 993 e 503982 1116 l 503859 993 503982 1116 71 } a { s 442 b 565754 999 e 565853 1107 l 565754 999 565773 1018 80 l 565774 1028 565853 1107 75 } a { s 428 b 1349079 981 e 1349290 1116 l 1349079 981 1349129 1031 73 l 1349206 1032 1349290 1116 74 } a { s 900 b 1558664 993 e 1558787 1116 l 1558664 993 1558787 1116 86 } a { s 11770 b 2353780 1 e 2354960 1181 l 2353780 1 2354960 1181 100 } a { s 580 b 2895764 993 e 2895887 1116 l 2895764 993 2895887 1116 73 } a { s 332 b 2974021 993 e 2974125 1116 l 2974021 993 2974056 1028 86 l 2974057 1033 2974072 1048 75 l 2974073 1050 2974084 1061 58 l 2974085 1076 2974125 1116 73 } a { s 430 b 3902798 1040 e 3902874 1116 l 3902798 1040 3902874 1116 78 } a { s 680 b 3971276 993 e 3971397 1114 l 3971276 993 3971397 1114 78 } a { s 708 b 4024093 35 e 4024403 345 l 4024093 35 4024214 156 66 l 4024218 157 4024374 313 59 l 4024375 317 4024403 345 79 } a { s 364 b 4123308 993 e 4123413 1116 l 4123308 993 4123345 1030 84 l 4123346 1049 4123413 1116 65 } a { s 510 b 4188001 992 e 4188125 1116 l 4188001 992 4188125 1116 70 } a { s 470 b 4215476 1005 e 4215574 1103 l 4215476 1005 4215574 1103 74 } a { s 360 b 4297383 1021 e 4297450 1088 l 4297383 1021 4297450 1088 76 } a { s 630 b 4382550 991 e 4382670 1111 l 4382550 991 4382670 1111 76 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1181 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig886_2.2 (reverse complement)" } a { s 474 b 116163 33 e 116393 189 l 116163 33 116193 63 61 l 116194 66 116278 150 76 l 116355 151 116393 189 79 } a { s 790 b 656104 66 e 656230 192 l 656104 66 656230 192 81 } a { s 640 b 812403 66 e 812526 189 l 812403 66 812526 189 76 } a { s 430 b 1809538 66 e 1809614 142 l 1809538 66 1809614 142 78 } a { s 700 b 1846737 63 e 1846866 192 l 1846737 63 1846866 192 77 } a { s 470 b 2513589 66 e 2513665 142 l 2513589 66 2513665 142 81 } a { s 350 b 3193875 66 e 3193951 142 l 3193875 66 3193951 142 73 } a { s 490 b 3453499 79 e 3453603 183 l 3453499 79 3453603 183 73 } a { s 418 b 3606182 58 e 3606308 183 l 3606182 58 3606235 111 59 l 3606237 112 3606308 183 76 } a { s 550 b 3626552 109 e 3626630 187 l 3626552 109 3626630 187 85 } a { s 280 b 4180402 132 e 4180459 189 l 4180402 132 4180459 189 74 } a { s 530 b 4364324 76 e 4364434 186 l 4364324 76 4364434 186 74 } a { s 472 b 4768940 66 e 4769105 192 l 4768940 66 4769024 150 75 l 4769064 151 4769105 192 71 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1236 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig888_2.2" } a { s 240 b 3475357 1071 e 3475402 1116 l 3475357 1071 3475402 1116 76 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1236 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig888_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1548 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig891_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1548 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig891_2.2 (reverse complement)" } a { s 2762 b 3862540 190 e 3863892 1535 l 3862540 190 3863106 756 58 l 3863107 766 3863121 780 53 l 3863122 783 3863603 1264 65 l 3863609 1265 3863635 1291 48 l 3863636 1297 3863748 1409 66 l 3863767 1410 3863892 1535 67 } a { s 14940 b 4627334 1 e 4628881 1548 l 4627334 1 4628881 1548 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1218 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig892_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1218 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig892_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1176 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig894_2.2" } a { s 7328 b 2764642 1 e 2765895 1176 l 2764642 1 2765154 513 97 l 2765162 514 2765180 532 84 l 2765181 542 2765184 545 100 l 2765185 557 2765211 583 59 l 2765212 594 2765232 614 52 l 2765236 615 2765265 644 50 l 2765266 658 2765292 684 52 l 2765293 686 2765311 704 68 l 2765320 705 2765338 723 58 l 2765358 724 2765384 750 52 l 2765414 751 2765426 763 69 l 2765430 764 2765446 780 82 l 2765452 781 2765463 792 83 l 2765509 793 2765835 1119 92 l 2765837 1120 2765868 1151 94 l 2765870 1152 2765881 1163 83 l 2765883 1164 2765895 1176 92 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1176 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig894_2.2 (reverse complement)" } a { s 7308 b 1109192 1 e 1110445 1176 l 1109192 1 1109204 13 92 l 1109206 14 1109217 25 83 l 1109219 26 1109250 57 94 l 1109252 58 1109578 384 92 l 1109624 385 1109635 396 83 l 1109641 397 1109657 413 82 l 1109661 414 1109673 426 69 l 1109703 427 1109729 453 52 l 1109749 454 1109767 472 58 l 1109776 473 1109794 491 68 l 1109795 493 1109821 519 52 l 1109822 533 1109851 562 50 l 1109855 563 1109875 583 52 l 1109876 594 1109902 620 59 l 1109903 632 1109906 635 100 l 1109907 645 1109925 663 84 l 1109933 664 1110445 1176 97 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1230 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig895_2.2" } a { s 6840 b 3446652 1 e 3447494 840 l 3446652 1 3447315 664 99 l 3447317 665 3447327 675 82 l 3447329 676 3447351 698 83 l 3447353 699 3447399 745 72 l 3447400 747 3447462 809 62 l 3447464 810 3447494 840 65 } a { s 410 b 4123641 405 e 4123775 539 l 4123641 405 4123775 539 65 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1230 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig895_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1408 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig896_2.2" } a { s 300 b 2910614 1371 e 2910651 1408 l 2910614 1371 2910651 1408 89 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1408 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig896_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1374 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig897_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1374 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig897_2.2 (reverse complement)" } a { s 13346 b 2819951 1 e 2821324 1374 l 2819951 1 2819980 30 90 l 2819981 32 2820033 84 98 l 2820035 85 2821324 1374 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1049 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig898_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1049 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig898_2.2 (reverse complement)" } a { s 10148 b 1825784 2 e 1826830 1049 l 1825784 2 1825842 60 92 l 1825843 62 1826830 1049 99 } a { s 230 b 1922752 342 e 1922804 394 l 1922752 342 1922804 394 72 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1263 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig899_2.2" } a { s 12190 b 22032 1 e 23294 1263 l 22032 1 23294 1263 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1263 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig899_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1307 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig902_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1307 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig902_2.2 (reverse complement)" } a { s 12710 b 106559 1 e 107865 1307 l 106559 1 107865 1307 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1156 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig905_2.2" } a { s 11036 b 356217 5 e 357370 1156 l 356217 5 357268 1056 99 l 357270 1057 357283 1070 100 l 357285 1071 357370 1156 95 } a { s 982 b 3443390 721 e 3443779 1108 l 3443390 721 3443701 1032 65 l 3443702 1044 3443710 1052 67 l 3443723 1053 3443741 1071 89 l 3443743 1072 3443779 1108 65 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1156 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig905_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1023 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig906_2.2" } a { s 10170 b 1644215 1 e 1645237 1023 l 1644215 1 1645237 1023 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1023 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig906_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1118 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig907_2.2" } a { s 318 b 2635584 778 e 2635704 892 l 2635584 778 2635626 820 70 l 2635633 821 2635704 892 65 } a { s 310 b 2636493 28 e 2636561 96 l 2636493 28 2636561 96 72 } a { s 300 b 2636507 831 e 2636568 892 l 2636507 831 2636568 892 74 } a { s 348 b 2637361 785 e 2637473 891 l 2637361 785 2637382 806 86 l 2637383 822 2637392 831 90 l 2637414 832 2637473 891 75 } a { s 400 b 2637398 27 e 2637467 96 l 2637398 27 2637467 96 79 } a { s 486 b 2638124 732 e 2638292 888 l 2638124 732 2638174 782 61 l 2638181 783 2638205 807 68 l 2638212 808 2638292 888 77 } a { s 350 b 2638217 24 e 2638289 96 l 2638217 24 2638289 96 74 } a { s 2964 b 2639029 2 e 2640056 1026 l 2639029 2 2639258 231 71 l 2639259 240 2639271 252 69 l 2639289 253 2639546 510 64 l 2639550 511 2639627 588 60 l 2639631 589 2639933 891 69 l 2639934 903 2639951 920 61 l 2639952 922 2640056 1026 64 } a { s 442 b 2639874 43 e 2640053 231 l 2639874 43 2639955 124 70 l 2639956 134 2640053 231 60 } a { s 386 b 2640572 720 e 2640759 892 l 2640572 720 2640653 801 61 l 2640658 802 2640670 814 69 l 2640671 816 2640686 831 69 l 2640699 832 2640759 892 75 } a { s 438 b 2640683 27 e 2640884 231 l 2640683 27 2640759 103 69 l 2640774 104 2640778 108 80 l 2640779 114 2640787 122 78 l 2640788 134 2640802 148 80 l 2640803 150 2640884 231 67 } a { s 240 b 2642248 35 e 2642309 96 l 2642248 35 2642309 96 69 } a { s 358 b 2643084 775 e 2643200 885 l 2643084 775 2643116 807 67 l 2643123 808 2643200 885 71 } a { s 320 b 2643131 27 e 2643206 102 l 2643131 27 2643206 102 71 } a { s 336 b 2643768 604 e 2644073 888 l 2643768 604 2643868 704 56 l 2643888 705 2643896 713 78 l 2643897 724 2643923 750 70 l 2643934 751 2643948 765 73 l 2643949 773 2643962 786 64 l 2643966 787 2644002 823 68 l 2644010 824 2644016 830 71 l 2644017 832 2644073 888 77 } a { s 300 b 2644015 41 e 2644070 96 l 2644015 41 2644070 96 77 } a { s 11100 b 2644818 1 e 2645935 1118 l 2644818 1 2645935 1118 100 } a { s 330 b 2644836 808 e 2644922 894 l 2644836 808 2644922 894 69 } a { s 340 b 2645628 22 e 2645711 105 l 2645628 22 2645711 105 70 } a { s 372 b 2646323 720 e 2646635 1023 l 2646323 720 2646408 805 60 l 2646413 806 2646438 831 50 l 2646450 832 2646510 892 72 l 2646511 907 2646529 925 58 l 2646530 927 2646549 946 50 l 2646559 947 2646635 1023 68 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1118 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig907_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1014 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig908_2.2" } a { s 5460 b 2478199 433 e 2478780 1014 l 2478199 433 2478780 1014 97 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1014 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig908_2.2 (reverse complement)" } a { s 4328 b 920223 547 e 920689 1014 l 920223 547 920250 574 64 l 920251 576 920689 1014 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1214 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig909_2.2" } a { s 11770 b 2292316 1 e 2293526 1211 l 2292316 1 2293526 1211 99 } a { s 1994 b 3405036 410 e 3405833 1204 l 3405036 410 3405599 973 66 l 3405600 977 3405612 989 69 l 3405614 990 3405618 994 80 l 3405628 995 3405632 999 80 l 3405633 1004 3405735 1106 63 l 3405754 1107 3405770 1123 59 l 3405771 1142 3405833 1204 68 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1214 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig909_2.2 (reverse complement)" } a { s 2256 b 1923926 29 e 1924705 805 l 1923926 29 1923970 73 67 l 1923972 74 1924000 102 55 l 1924001 104 1924116 219 59 l 1924121 220 1924138 237 50 l 1924139 239 1924705 805 69 } a { s 2152 b 3122689 52 e 3123443 803 l 3122689 52 3122859 222 57 l 3122866 223 3122875 232 70 l 3122876 236 3123443 803 68 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1261 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig911_2.2" } a { s 12438 b 4537967 5 e 4539222 1261 l 4537967 5 4538938 976 100 l 4538939 978 4539222 1261 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1261 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig911_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1202 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig917_2.2" } a { s 11700 b 2483609 1 e 2484810 1202 l 2483609 1 2484810 1202 99 } a { s 480 b 3748352 1081 e 3748473 1202 l 3748352 1081 3748473 1202 70 } a { s 670 b 4671226 1021 e 4671404 1199 l 4671226 1021 4671404 1199 69 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1202 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig917_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1107 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig918_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1107 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig918_2.2 (reverse complement)" } a { s 10750 b 192196 2 e 193300 1106 l 192196 2 193300 1106 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1810 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig919_2.2" } a { s 17258 b 62673 3 e 64481 1810 l 62673 3 62738 68 98 l 62740 69 64481 1810 98 } a { s 8490 b 3518731 876 e 3519665 1810 l 3518731 876 3519665 1810 95 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1810 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig919_2.2 (reverse complement)" } a { s 8560 b 832287 1 e 833220 934 l 832287 1 833220 934 96 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1388 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig923_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1388 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig923_2.2 (reverse complement)" } a { s 13660 b 405135 1 e 406516 1382 l 405135 1 406516 1382 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1055 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig925_2.2" } a { s 7658 b 3741254 1 e 3742113 871 l 3741254 1 3742045 792 98 l 3742046 794 3742053 801 100 l 3742054 803 3742066 815 92 l 3742067 818 3742074 825 100 l 3742075 827 3742080 832 100 l 3742081 834 3742087 840 100 l 3742088 843 3742094 849 100 l 3742095 853 3742113 871 68 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1055 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig925_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1207 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig926_2.2" } a { s 11900 b 1054881 3 e 1056084 1206 l 1054881 3 1056084 1206 99 } a { s 230 b 2069296 361 e 2069330 395 l 2069296 361 2069330 395 83 } a { s 1070 b 2785906 218 e 2786088 400 l 2785906 218 2786088 400 79 } a { s 5070 b 3406432 218 e 3407420 1206 l 3406432 218 3407420 1206 76 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1207 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig926_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1113 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig929_2.2" } a { s 10870 b 2288898 1 e 2290010 1113 l 2288898 1 2290010 1113 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1113 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig929_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1000 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig931_2.2" } a { s 9678 b 3398355 5 e 3399351 1000 l 3398355 5 3398911 561 99 l 3398913 562 3399351 1000 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1000 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig931_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1045 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig932_2.2" } a { s 530 b 1066373 149 e 1066695 477 l 1066373 149 1066430 206 69 l 1066431 210 1066467 246 76 l 1066471 247 1066475 251 80 l 1066476 253 1066501 278 46 l 1066502 284 1066588 370 70 l 1066589 380 1066605 396 71 l 1066615 397 1066695 477 57 } a { s 444 b 1066481 2 e 1066834 355 l 1066481 2 1066572 93 70 l 1066620 94 1066639 113 70 l 1066640 125 1066648 133 67 l 1066649 170 1066726 247 64 l 1066727 275 1066734 282 88 l 1066762 283 1066834 355 70 } a { s 10270 b 1066741 1 e 1067785 1045 l 1066741 1 1067785 1045 99 } a { s 300 b 1067024 23 e 1067095 94 l 1067024 23 1067095 94 71 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1045 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig932_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1539 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig935_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1539 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig935_2.2 (reverse complement)" } a { s 526 b 385597 392 e 386533 1340 l 385597 392 385916 711 60 l 385941 712 385953 724 85 l 385954 770 385963 779 70 l 385964 784 385973 793 80 l 385982 794 386015 827 53 l 386022 828 386059 865 47 l 386060 870 386093 903 56 l 386100 904 386380 1184 53 l 386387 1185 386399 1197 69 l 386400 1207 386533 1340 57 } a { s 14770 b 388386 1 e 389924 1539 l 388386 1 389924 1539 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1005 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig937_2.2" } a { s 9730 b 3770542 1 e 3771546 1005 l 3770542 1 3771546 1005 98 } a { s 620 b 4569608 635 e 4569939 966 l 4569608 635 4569939 966 59 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1005 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig937_2.2 (reverse complement)" } a { s 230 b 659991 314 e 660031 354 l 659991 314 660031 354 78 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1122 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig938_2.2" } a { s 10980 b 4592316 3 e 4593435 1122 l 4592316 3 4593435 1122 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1122 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig938_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1352 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig940_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1352 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig940_2.2 (reverse complement)" } a { s 13042 b 4165728 1 e 4167081 1352 l 4165728 1 4165754 27 96 l 4165756 28 4165803 75 94 l 4165805 76 4165812 83 100 l 4165813 85 4165864 136 100 l 4165866 137 4167081 1352 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1260 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig941_2.2" } a { s 12328 b 1977122 1 e 1978380 1260 l 1977122 1 1978260 1139 99 l 1978261 1141 1978380 1260 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1260 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig941_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1225 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig944_2.2" } a { s 11888 b 1602403 1 e 1603628 1225 l 1602403 1 1603535 1133 99 l 1603537 1134 1603628 1225 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1225 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig944_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1061 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig945_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1061 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig945_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1247 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig949_2.2" } a { s 290 b 4169598 188 e 4169644 234 l 4169598 188 4169644 234 81 } a { s 408 b 4683178 191 e 4683240 254 l 4683178 191 4683214 227 84 l 4683215 229 4683240 254 92 } a { s 240 b 4722005 192 e 4722040 227 l 4722005 192 4722040 227 83 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1247 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig949_2.2 (reverse complement)" } a { s 12090 b 150067 1 e 151313 1247 l 150067 1 151313 1247 98 } a { s 430 b 1254747 994 e 1254809 1056 l 1254747 994 1254809 1056 84 } a { s 230 b 3877277 1016 e 3877309 1048 l 3877277 1016 3877309 1048 85 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1067 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig950_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1067 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig950_2.2 (reverse complement)" } a { s 10410 b 2921325 1 e 2922391 1067 l 2921325 1 2922391 1067 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1695 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig951_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1695 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig951_2.2 (reverse complement)" } a { s 16556 b 1052749 12 e 1054434 1695 l 1052749 12 1052781 44 94 l 1052783 45 1052809 71 100 l 1052811 72 1054434 1695 100 } a { s 840 b 3087136 1310 e 3087503 1677 l 3087136 1310 3087503 1677 61 } a { s 340 b 4819529 572 e 4819602 645 l 4819529 572 4819602 645 73 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1280 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig952_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1280 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig952_2.2 (reverse complement)" } a { s 12420 b 658331 1 e 659610 1280 l 658331 1 659610 1280 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1234 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig953_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1234 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig953_2.2 (reverse complement)" } a { s 11994 b 166866 3 e 168100 1234 l 166866 3 168023 1160 100 l 168025 1161 168085 1221 92 l 168088 1222 168100 1234 85 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1134 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig954_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1134 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig954_2.2 (reverse complement)" } a { s 8720 b 3834679 1 e 3835799 1129 l 3834679 1 3834685 7 100 l 3834686 9 3834715 38 93 l 3834716 40 3834814 138 94 l 3834815 140 3834984 309 94 l 3834985 311 3834993 319 78 l 3834994 321 3835208 535 96 l 3835209 537 3835358 686 91 l 3835360 687 3835519 846 94 l 3835520 848 3835759 1087 85 l 3835760 1089 3835769 1098 90 l 3835770 1100 3835799 1129 87 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1255 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig955_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1255 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig955_2.2 (reverse complement)" } a { s 11950 b 295225 1 e 296479 1255 l 295225 1 296479 1255 98 } a { s 478 b 3325599 2 e 3325731 140 l 3325599 2 3325649 52 76 l 3325650 59 3325731 140 67 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1169 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig959_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1169 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig959_2.2 (reverse complement)" } a { s 10204 b 1816467 1 e 1817639 1169 l 1816467 1 1817163 697 100 l 1817165 698 1817178 711 57 l 1817180 712 1817213 745 47 l 1817215 746 1817316 847 90 l 1817317 855 1817323 861 57 l 1817330 862 1817336 868 71 l 1817338 869 1817568 1099 97 l 1817570 1100 1817639 1169 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1334 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig961_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1334 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig961_2.2 (reverse complement)" } a { s 13280 b 1642910 1 e 1644243 1334 l 1642910 1 1644243 1334 100 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1001 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig964_2.2" } a { s 9690 b 4296063 1 e 4297063 1001 l 4296063 1 4297063 1001 98 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1001 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig964_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1326 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig965_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1326 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig965_2.2 (reverse complement)" } a { s 12980 b 3250080 1 e 3251405 1326 l 3250080 1 3251405 1326 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1675 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig966_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1675 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig966_2.2 (reverse complement)" } a { s 16430 b 1488936 1 e 1490610 1675 l 1488936 1 1490610 1675 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1432 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig967_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1432 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig967_2.2 (reverse complement)" } a { s 2720 b 962638 345 e 963717 1424 l 962638 345 963717 1424 63 } a { s 14140 b 1097904 1 e 1099333 1430 l 1097904 1 1099333 1430 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1187 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig968_2.2" } a { s 11630 b 3637056 1 e 3638242 1187 l 3637056 1 3638242 1187 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1187 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig968_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1402 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig969_2.2" } a { s 500 b 1102853 1326 e 1102918 1391 l 1102853 1326 1102918 1391 88 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1402 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig969_2.2 (reverse complement)" } a { s 3320 b 1966659 2 e 1966998 341 l 1966659 2 1966998 341 99 } a { s 500 b 2772220 12 e 2772285 77 l 2772220 12 2772285 77 88 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1490 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig971_2.2" } a { s 13064 b 1334684 1 e 1336141 1462 l 1334684 1 1334844 161 95 l 1334845 163 1335375 693 95 l 1335376 695 1335852 1171 99 l 1335853 1173 1335926 1246 100 l 1335927 1249 1336077 1399 93 l 1336078 1401 1336091 1414 100 l 1336093 1415 1336113 1435 90 l 1336115 1436 1336141 1462 89 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1490 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig971_2.2 (reverse complement)" } a { s 236 b 2525007 862 e 2525046 899 l 2525007 862 2525031 886 96 l 2525034 887 2525046 899 77 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1222 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig974_2.2" } a { s 230 b 523934 713 e 523958 737 l 523934 713 523958 737 96 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1222 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig974_2.2 (reverse complement)" } a { s 11878 b 523448 1 e 524670 1222 l 523448 1 523461 14 86 l 523463 15 524670 1222 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1391 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig975_2.2" } a { s 920 b 882061 133 e 883319 1210 l 882061 133 882169 241 67 l 882170 254 882177 261 63 l 882187 262 882373 448 59 l 882387 449 882394 456 88 l 882395 470 882499 574 57 l 882506 575 882522 591 71 l 882523 605 882530 612 88 l 882538 613 882642 717 65 l 882643 719 882668 744 69 l 882669 746 882707 784 62 l 882720 785 882738 803 58 l 882739 813 882808 882 54 l 882812 883 882823 894 75 l 882830 895 882844 909 73 l 882939 910 882960 931 59 l 883047 932 883112 997 64 l 883113 1006 883146 1039 44 l 883149 1040 883319 1210 67 } a { s 13356 b 3754090 1 e 3755477 1390 l 3754090 1 3754807 718 98 l 3754808 720 3754832 744 100 l 3754833 746 3755477 1390 99 } a { s 592 b 3754159 849 e 3754439 1132 l 3754159 849 3754193 883 69 l 3754202 884 3754214 896 69 l 3754215 905 3754343 1033 57 l 3754344 1037 3754439 1132 74 } a { s 572 b 3754936 70 e 3755215 346 l 3754936 70 3754970 104 71 l 3754971 113 3754983 125 69 l 3754992 126 3755120 254 57 l 3755124 255 3755215 346 73 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1391 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig975_2.2 (reverse complement)" } a { s 420 b 202584 216 e 202683 315 l 202584 216 202683 315 71 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1082 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig980_2.2" } a { s 10544 b 13208 1 e 14286 1082 l 13208 1 13248 41 100 l 13249 43 13256 50 100 l 13257 52 13263 58 100 l 13264 60 14286 1082 100 } a { s 230 b 4555562 694 e 4555590 722 l 4555562 694 4555590 722 90 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1082 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig980_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1077 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig981_2.2" } a { s 10388 b 4307806 1 e 4308883 1077 l 4307806 1 4308823 1018 99 l 4308825 1019 4308883 1077 95 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1077 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig981_2.2 (reverse complement)" } a { s 514 b 3354615 343 e 3354852 583 l 3354615 343 3354650 378 67 l 3354651 382 3354852 583 61 } a { s 324 b 4186382 497 e 4186457 564 l 4186382 497 4186391 506 90 l 4186400 507 4186457 564 78 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1073 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig986_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1073 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig986_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1496 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig989_2.2" } a { s 240 b 80984 432 e 81015 463 l 80984 432 81015 463 88 } a { s 270 b 81686 433 e 81716 463 l 81686 433 81716 463 94 } a { s 366 b 85427 433 e 85498 504 l 85427 433 85457 463 90 l 85459 464 85477 482 79 l 85478 484 85498 504 81 } a { s 276 b 522221 431 e 522272 480 l 522221 431 522254 464 85 l 522257 465 522272 480 81 } a { s 290 b 801278 428 e 801314 464 l 801278 428 801314 464 89 } a { s 250 b 2427608 433 e 2427638 463 l 2427608 433 2427638 463 90 } a { s 532 b 2676250 661 e 2676828 1233 l 2676250 661 2676298 709 65 l 2676305 710 2676396 801 59 l 2676397 805 2676457 865 48 l 2676461 866 2676508 913 69 l 2676510 914 2676530 934 57 l 2676531 936 2676661 1066 60 l 2676662 1072 2676700 1110 49 l 2676706 1111 2676828 1233 61 } a { s 250 b 2942947 433 e 2942979 465 l 2942947 433 2942979 465 88 } a { s 260 b 3124470 433 e 3124503 466 l 3124470 433 3124503 466 88 } a { s 280 b 3130045 431 e 3130076 462 l 3130045 431 3130076 462 94 } a { s 310 b 3239481 433 e 3239515 467 l 3239481 433 3239515 467 94 } a { s 290 b 3470099 468 e 3470135 504 l 3470099 468 3470135 504 89 } a { s 300 b 3708552 467 e 3708589 504 l 3708552 467 3708589 504 89 } a { s 230 b 4007495 432 e 4007525 462 l 4007495 432 4007525 462 87 } a { s 270 b 4121783 432 e 4121815 464 l 4121783 432 4121815 464 91 } a { s 290 b 4149357 468 e 4149393 504 l 4149357 468 4149393 504 89 } a { s 360 b 4255952 432 e 4256035 504 l 4255952 432 4255984 464 94 l 4255998 465 4256015 482 78 l 4256016 485 4256035 504 80 } a { s 240 b 4260000 433 e 4260031 464 l 4260000 433 4260031 464 88 } a { s 290 b 4341357 433 e 4341387 463 l 4341357 433 4341387 463 97 } a { s 272 b 4545253 404 e 4545322 464 l 4545253 404 4545274 425 73 l 4545282 426 4545289 433 75 l 4545292 434 4545322 464 94 } a { s 340 b 4692453 433 e 4692536 506 l 4692453 433 4692474 454 73 l 4692479 455 4692491 467 85 l 4692498 468 4692536 506 87 } a { s 12754 b 4719929 1 e 4721414 1489 l 4719929 1 4721227 1299 96 l 4721228 1301 4721301 1374 80 l 4721302 1376 4721331 1405 80 l 4721332 1407 4721414 1489 76 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1496 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig989_2.2 (reverse complement)" } a { s 280 b 117948 1034 e 117979 1065 l 117948 1034 117979 1065 94 } a { s 270 b 836272 1026 e 836310 1064 l 836272 1026 836310 1064 85 } a { s 240 b 1254874 995 e 1254909 1030 l 1254874 995 1254909 1030 83 } a { s 260 b 3207961 992 e 3207998 1029 l 3207961 992 3207998 1029 84 } a { s 230 b 3386091 1034 e 3386119 1062 l 3386091 1034 3386119 1062 90 } a { s 280 b 3814352 1023 e 3814393 1064 l 3814352 1023 3814393 1064 83 } a { s 290 b 4063491 1034 e 4063521 1064 l 4063491 1034 4063521 1064 97 } a { s 260 b 4338197 1035 e 4338226 1064 l 4338197 1035 4338226 1064 93 } a { s 260 b 4524331 1033 e 4524362 1064 l 4524331 1033 4524362 1064 91 } a { s 260 b 4708294 1033 e 4708327 1066 l 4708294 1033 4708327 1066 88 } a { s 290 b 4822218 1032 e 4822250 1064 l 4822218 1032 4822250 1064 94 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1201 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig993_2.2" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1201 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig993_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU" 1 1211 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig994_2.2" } a { s 11790 b 841602 1 e 842812 1211 l 841602 1 842812 1211 99 } #:lav d { "blastz STM SDU W=12 M = 10, I = -10, V = -10, O = 60, E = 2" } s { "STM" 1 4951371 "SDU-" 1 1211 } h { ">SUPERLINK_RWST 1-4857432 + PLASMID" ">Contig994_2.2 (reverse complement)" } #:lav d { "blastz STM SDU W=12 M = 10