================================================== file name: human sequences: 1 total length: 36284 bp GC level: 56.42 % bases masked 15064 bp ( 41.52 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 28 7635 bp 21.04 % ALUs 26 7354 bp 20.27 % MIRs 2 281 bp 0.77 % LINEs: 7 4310 bp 11.88 % LINE1 6 4137 bp 11.40 % LINE2 1 173 bp 0.48 % LTR elements: 7 2568 bp 7.08 % MaLRs 4 992 bp 2.73 % Retrov. 1 921 bp 2.54 % MER4_group 0 0 bp 0.00 % DNA elements: 0 0 bp 0.00 % MER1_type 0 0 bp 0.00 % MER2_type 0 0 bp 0.00 % Mariners 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 14513 bp 40.00 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 6 383 bp 1.06 % Low complexity: 1 162 bp 0.45 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The sequence(s) were assumed to be of primate origin. RepeatMasker version 04/04/99 default ProcessRepeats version 12/12/98 SW % % % name query position in query (bp left) name matching type of repeat pos. in repeat (bp left) score div del ins sequence begin end (over) repeat class/family begin end (unaligned) 311 29.4 12.9 4.7 HSAJ9610 199 368 (35916) + L1MC3 LINE/L1 7437 7620 (120) 2479 5.3 0.0 3.4 HSAJ9610 769 1090 (35194) C AluY SINE/Alu (0) 311 1 1726 9.9 11.3 5.5 HSAJ9610 1093 1233 (35051) C AluY SINE/Alu (2) 309 178 261 0.0 0.0 0.0 HSAJ9610 1234 1262 (35022) + (TTTTG)n Simple_repeat 2 30 (0) 1879 11.2 2.2 0.0 HSAJ9610 1267 1533 (34751) C AluSg SINE/Alu (35) 275 3 1726 9.9 11.3 5.5 HSAJ9610 1534 1678 (34606) C AluY SINE/Alu (133) 178 1 1248 8.6 14.5 6.8 HSAJ9610 1681 1823 (34461) C AluSx SINE/Alu (3) 309 140 2070 10.2 0.0 0.3 HSAJ9610 1824 2106 (34178) C AluSg SINE/Alu (24) 286 5 1248 8.6 14.5 6.8 HSAJ9610 2107 2196 (34088) C AluSx SINE/Alu (172) 140 58 2245 9.7 1.0 0.0 HSAJ9610 2225 2533 (33751) C AluSx SINE/Alu (0) 312 1 1944 6.9 10.2 0.4 HSAJ9610 3109 3382 (32902) C AluY SINE/Alu (10) 301 1 559 30.0 4.0 0.4 HSAJ9610 4470 4696 (31588) + MER90 LTR 70 304 (311) 749 34.9 7.0 5.5 HSAJ9610 5128 5331 (30953) C L1M4 LINE/L1 (803) 5343 5144 2083 11.2 0.0 1.6 HSAJ9610 5332 5634 (30650) C AluSg SINE/Alu (12) 298 1 749 34.9 7.0 5.5 HSAJ9610 5635 6028 (30256) C L1M4 LINE/L1 (1002) 5144 4736 2307 10.0 0.0 0.0 HSAJ9610 6217 6515 (29769) + AluSq SINE/Alu 1 299 (14) 779 12.3 2.6 0.0 HSAJ9610 6531 6761 (29523) + AluJo SINE/Alu 8 299 (13) 2336 8.0 1.3 1.0 HSAJ9610 6795 7106 (29178) C AluSp SINE/Alu (0) 313 1 2357 8.6 0.0 0.3 HSAJ9610 7107 7409 (28875) C AluSp SINE/Alu (11) 302 1 1787 14.7 4.2 0.0 HSAJ9610 7444 7729 (28555) + AluSx SINE/Alu 1 298 (14) 2396 8.6 0.0 0.3 HSAJ9610 7789 8101 (28183) C AluSx SINE/Alu (0) 312 1 410 34.6 6.0 1.7 HSAJ9610 10206 10439 (25845) + L1M4 LINE/L1 4747 4990 (1156) 2169 9.3 0.7 0.7 HSAJ9610 10443 10742 (25542) + AluSx SINE/Alu 1 300 (12) 1333 15.8 12.1 2.2 HSAJ9610 10869 10904 (25380) C MER34B LTR/MER21-group (0) 599 568 216 0.0 0.0 0.0 HSAJ9610 10905 10928 (25356) + (TTTA)n Simple_repeat 2 25 (0) 1939 12.5 1.4 0.0 HSAJ9610 10929 11215 (25069) C AluSx SINE/Alu (21) 291 1 1333 15.8 12.1 2.2 HSAJ9610 11216 11499 (24785) C MER34B LTR/MER21-group (31) 568 246 1722 15.1 5.8 4.8 HSAJ9610 11501 11878 (24406) C MSTB LTR/MaLR (1) 425 44 536 12.6 0.0 0.0 HSAJ9610 11993 12079 (24205) C MSTB LTR/MaLR (339) 87 1 483 20.4 6.5 0.0 HSAJ9610 12080 12187 (24097) C MER34B LTR/MER21-group (349) 250 136 2885 23.4 5.7 3.4 HSAJ9610 12188 12886 (23398) + L1M4 LINE/L1 3877 4559 (1587) 2167 10.3 0.7 0.0 HSAJ9610 12887 13178 (23106) C AluSc SINE/Alu (15) 294 1 2885 23.4 5.7 3.4 HSAJ9610 13179 13288 (22996) + L1M4 LINE/L1 4559 4665 (1481) 2168 11.3 2.3 0.0 HSAJ9610 13289 13588 (22696) + AluSx SINE/Alu 1 307 (5) 2885 23.4 5.7 3.4 HSAJ9610 13589 13745 (22539) + L1M4 LINE/L1 4665 4866 (1280) 4217 17.4 2.6 3.6 HSAJ9610 13746 14059 (22225) C L1MB5 LINE/L1 (6) 6170 5854 2374 5.4 0.7 0.0 HSAJ9610 14060 14357 (21927) C AluY SINE/Alu (9) 302 3 4217 17.4 2.6 3.6 HSAJ9610 14358 14714 (21570) C L1MB5 LINE/L1 (322) 5854 5495 195 4.2 0.0 0.0 HSAJ9610 14716 14739 (21545) + (TTTTC)n Simple_repeat 2 25 (0) 2222 6.0 1.4 0.0 HSAJ9610 14740 15018 (21266) C AluY SINE/Alu (26) 285 1 4217 17.4 2.6 3.6 HSAJ9610 15019 15353 (20931) C L1MB5 LINE/L1 (681) 5495 5158 439 0.0 6.6 0.0 HSAJ9610 15354 15414 (20870) + (TTTTA)n Simple_repeat 4 68 (0) 2047 11.2 0.0 0.3 HSAJ9610 15416 15700 (20584) C AluSq SINE/Alu (29) 284 1 4217 17.4 2.6 3.6 HSAJ9610 15701 15870 (20414) C L1MB5 LINE/L1 (1018) 5158 4986 891 24.8 5.2 3.6 HSAJ9610 15876 16182 (20102) + L1M4 LINE/L1 4849 5160 (986) 1019 11.3 1.4 12.3 HSAJ9610 16726 16937 (19347) + AluSg/x SINE/Alu 117 305 (7) 1092 17.9 4.2 7.5 HSAJ9610 16938 17089 (19195) C MLT1A1 LTR/MaLR (66) 299 161 2123 9.1 1.4 0.0 HSAJ9610 17090 17375 (18909) C AluSx SINE/Alu (22) 290 1 1092 17.9 4.2 7.5 HSAJ9610 17376 17530 (18754) C MLT1A1 LTR/MaLR (204) 161 2 2412 4.4 0.7 0.3 HSAJ9610 17663 17959 (18325) + AluY SINE/Alu 3 300 (11) 385 34.9 4.8 2.6 HSAJ9610 18738 18926 (17358) + MIR SINE/MIR 51 243 (19) 6319 9.4 0.7 0.3 HSAJ9610 19498 20418 (15866) C LTR5 LTR/Retroviral (0) 969 2 351 22.8 1.1 3.3 HSAJ9610 21877 21968 (14316) C MIR SINE/MIR (114) 148 59 180 33.5 5.2 2.9 HSAJ9610 24431 24603 (11681) + L2 LINE/L2 2370 2546 (164) 327 21.0 3.7 0.0 HSAJ9610 25795 25875 (10409) C MLT1D LTR/MaLR (116) 389 306 613 14.1 11.6 0.0 HSAJ9610 25963 26101 (10183) C MLT1C LTR/MaLR (279) 187 23 248 5.7 0.5 15.3 HSAJ9610 30644 30852 (5432) + (CACCC)n Simple_repeat 1 178 (0) * 307 11.6 2.9 7.0 HSAJ9610 30805 30976 (5308) + C-rich Low_complexity 3 167 (0) 741 21.6 8.0 0.6 HSAJ9610 34621 34782 (1502) + FAM SINE/Alu 1 174 (1) 2529 21.8 8.9 1.5 HSAJ9610 34786 35412 (872) C L1MB3 LINE/L1 (18) 6167 5483 2129 9.2 0.0 6.6 HSAJ9610 35413 35747 (537) C AluSq SINE/Alu (0) 313 1 2529 21.8 8.9 1.5 HSAJ9610 35748 35806 (478) C L1MB3 LINE/L1 (702) 5483 5430 324 0.0 0.0 0.0 HSAJ9610 35830 35865 (419) + (CA)n Simple_repeat 2 37 (0) 203 10.5 5.3 0.0 HSAJ9610 36215 36252 (32) + GA-rich Low_complexity 3 42 (0)